Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01552 ATGGGGTGTTTCACTGTATTGAAGAGCAAGAAGAAGAAGTCTGATTCGTTTGCCTATGTAAAACGCATAAACCATAACGATCATGTGCCTTCAGTACTTCCTGAACCTCAAACTCATACTCGTTCACTACAGTCTGCACCTCCTAGTTTTAGGACAAGAGTGAAACCCATTCAACCTGTTAATAAAGCCACTAACAGTAGAACACGGGCATTGTCTGCTCCATCTACTCTTGATGCAGCAGATCAAGATGCTTTGGCCTCAATGGAGTATGAGGAACAAGAAGAGTCAAAATACCGGGGAGGAGGCTCAATGAAGGAGCAGCGTTCTTCTAGTCCACAACCTTTACCACTTCCATCTCCTCATGGAGGTAGTTCACTGAAGGCTATTGGCAGCTTTAAGTTGGGGACTGCTACTGTTCCTTTACATGCTTCAGGACCTTTGCCGCTTCCACCAACTGGTTCACTTCGTAACTTTCCGTATGAGGAAGTTGCTGCTGCTTGCCACAATTTCTCTTCTGATCGATGCATGTCAGAATGTCTTTCATCTACAATATACAAAGCTTACTTTGGTGATGATCCTTCAAGTGCAAAGAAGTTTGAAGCCACTGTCACACGCCTTCGCCCATCATCTCAGGGCTTGAAGGATTTCATAAACGAGGTCAATACTCTCGCAACTTTGCAACATCCAAACCTCTGTAAACTGCTAGGATTTCATGCTCGTGATGGTTCAGAACATAGAATGTTGGTCTATGAGAGGCTATATCATGGAAGCTTGGACCGCCTGTTGTATGGTAGATCTGATGGACCATCCATTGATTGGAATACAAGAATGAAAATTGCAATGTGTGCTGCACAAGGTCTTACTTTCTTGCACGAAGAAGGGCCTTTTCAGGCAATGTATAATGAATTCTCAACAGCCAACATACAGATTGACAAAGATTTCAGTGCCAAGCTTTCAGGATATGGTTGTGTTGGACATATTCCCGAGGAAGAGATTTCCAGTAGTTCATCTGCTGTTGGAAACCTATCAATGGAGACACTGGAGAAGGGAATGCTAACACCAAAGAGCAATGTGTGGAGCTTTGGAATTTTTCTTTTGGAGTTACTTACTGGAAGAAAGAATCTCCATAGCCGTCACCCCAAGGAAGAGAGGAATTTAGTCAAATGGAGCAGGCCTTTCCTAGCTGATGATTACCGTTTATCGTTGATCATGGACCCTCAACTTAAAGGTCGATTTCCTTCCAAAGCAGCAAGAACAATAGCCGACATTGCACAAAAATGCCTACAAAAGGAGCCATCGGAtagacccaccatgagaattgTTGTTGAGCATCTCAAAACGATACAGGATTTGAAATACTCTTGCAGGTTCCCACTCCAAGAACCAGCGCCATTATCCGGAAAAGAAATGTCAAGATCACCAAGTCTTAATGGTATCGTCTGCCCTGCACCAAGGTTGAGTTTTTCTCCATCACGGCCATCCGTAGCCCAGCTATCTGTTTCACCTCCAAGATGGTCCGGTGTGCCTGTCCTTCCACCTCGAGCTTGTTCTTCTATGGAAGAACTCGATAGGCAAGAAAGCCGTAAGTCATCCTCAGCCTCTAGGAGGGCTAGTGTTGAAGGATTTTGA 1629 0.4383 MGCFTVLKSKKKKSDSFAYVKRINHNDHVPSVLPEPQTHTRSLQSAPPSFRTRVKPIQPVNKATNSRTRALSAPSTLDAADQDALASMEYEEQEESKYRGGGSMKEQRSSSPQPLPLPSPHGGSSLKAIGSFKLGTATVPLHASGPLPLPPTGSLRNFPYEEVAAACHNFSSDRCMSECLSSTIYKAYFGDDPSSAKKFEATVTRLRPSSQGLKDFINEVNTLATLQHPNLCKLLGFHARDGSEHRMLVYERLYHGSLDRLLYGRSDGPSIDWNTRMKIAMCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEEEISSSSSAVGNLSMETLEKGMLTPKSNVWSFGIFLLELLTGRKNLHSRHPKEERNLVKWSRPFLADDYRLSLIMDPQLKGRFPSKAARTIADIAQKCLQKEPSDRPTMRIVVEHLKTIQDLKYSCRFPLQEPAPLSGKEMSRSPSLNGIVCPAPRLSFSPSRPSVAQLSVSPPRWSGVPVLPPRACSSMEELDRQESRKSSSASRRASVEGF 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01552 542 MobiDBLite consensus disorder prediction 25 128 - -
Tsu04g01552 542 MobiDBLite consensus disorder prediction 519 533 - -
Tsu04g01552 542 MobiDBLite consensus disorder prediction 58 75 - -
Tsu04g01552 542 MobiDBLite consensus disorder prediction 31 51 - -
Tsu04g01552 542 ProSiteProfiles Protein kinase domain profile. 170 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01552 542 Gene3D Transferase(Phosphotransferase) domain 1 253 456 - -
Tsu04g01552 542 SUPERFAMILY Protein kinase-like (PK-like) 149 457 IPR011009 -
Tsu04g01552 542 MobiDBLite consensus disorder prediction 498 542 - -
Tsu04g01552 542 PANTHER OS01G0588500 PROTEIN-RELATED 44 541 - -
Tsu04g01552 542 Pfam Protein tyrosine and serine/threonine kinase 184 445 IPR001245 GO:0004672|GO:0006468
Tsu04g01552 542 Gene3D Phosphorylase Kinase; domain 1 151 251 - -
Tsu04g01552 542 PANTHER OS01G0822200 PROTEIN 44 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01552 Tsu-Chr4 16360891 16365200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01552 149 449 Receptor kinase-like Gene Family AT4G02010 37.785 2.25e-54 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Tsu04g01552 PK_Tyr_Ser-Thr 1.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01552 - - gmx:100809117 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01552 04 16360891 16365200 Tsu04g01552 04 16360891 16365200 ECH
Tsu04g01552 04 16360891 16365200 Tsu06g00491 06 4152169 4156758 PCT