Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01550 ATGAAACGCCGTTTTCTTGACACAGAAGTGAGTATGCCACCATCATACAACAACAACTCAAACGATTCATTCATAAACGTCGAAAATTTCGACACAAACATGGTGATTATATTAGCAGCACTCTTATGTGCATTGATATGTGCTCTAGGATTAAACACCATAGCACGCTGCGTGATGCGATGTAACAGAGGATTCTCCGATGAGACACCGGAACAAGCGACAACAAGGTTGAACAAAACAGGGCTGAAAAAGACTGAACTGAGTCAAATTCCGGTAACAATTTACCGTACCGGAGAGAATATTCCGGTAACAGAGTGTCCCATTTGTTTAGGAGAGTTTGAGAATGGAGACAGAGTTCGAATGTTGCCAAAATGTAATCACGTGTTTCATGTTATGTGTATTGACACGTGGTTGGTGTCTCATTCTTCTTGTCCCAATTGTAGAAATTCACTTCTTGTTGAGAGAGAATCCAATGTTGTTTGTTCTGCCGGAGATGGGTTGCCGGAAAATGTTGCGGCAGTGATTGTTGAGGTGGAAGCAAGTTGA 546 0.4194 MKRRFLDTEVSMPPSYNNNSNDSFINVENFDTNMVIILAALLCALICALGLNTIARCVMRCNRGFSDETPEQATTRLNKTGLKKTELSQIPVTIYRTGENIPVTECPICLGEFENGDRVRMLPKCNHVFHVMCIDTWLVSHSSCPNCRNSLLVERESNVVCSAGDGLPENVAAVIVEVEAS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01550 181 SMART ring_2 106 147 IPR001841 -
Tsu04g01550 181 CDD RING-H2_EL5_like 105 148 - -
Tsu04g01550 181 SUPERFAMILY RING/U-box 92 153 - -
Tsu04g01550 181 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Tsu04g01550 181 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 158 - -
Tsu04g01550 181 Pfam Ring finger domain 105 148 IPR001841 -
Tsu04g01550 181 PANTHER RING-H2 FINGER PROTEIN ATL74 1 158 - -
Tsu04g01550 181 SMART FANCL_C_2 102 156 - -
Tsu04g01550 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 152 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01550 Tsu-Chr4 16335889 16336765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01550 1 165 C3H Transcription Factor Family AT3G10910 51.149 6.93e-53 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01550 K19040 - gmx:100810195 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01550 04 16335889 16336765 Tsu04g01550 04 16335889 16336765 ECH