Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01543 ATGGTGAAGAAACAATATTGTAATTTAGCACGAAGGTTGAAGTTTTTGATCCCTTTGTTTGATGAGAGTAGGGATATGAAAGATTCAATTCCAATTGATATTTCAAAAGCTGTGATTTTGTTCAACGAAGCTCTTGAATTAGCTAAAGAACTTCTCAGATTTGGAAGTGAAGGAAGCAAtgGGTTGCTCGAGGTTATTGAGGGAGAGTTTGATGAGGATGAAACTGTAGAAACCATCACATGTGTAGTGCTCACTAATAATCATTATCTTGTATGA 276 0.3514 MVKKQYCNLARRLKFLIPLFDESRDMKDSIPIDISKAVILFNEALELAKELLRFGSEGSNGLLEVIEGEFDEDETVETITCVVLTNNHYLV 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01543 91 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 67 - -
Tsu04g01543 91 PANTHER U BOX DOMAIN-CONTAINING 2 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01543 Tsu-Chr4 16250220 16253736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01543 2 59 U-box Gene Family AT3G46510 46.552 1.65e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01543 - - pvu:PHAVU_011G064700g 92.0485