Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01533 ATGTACAAGGGGAGATTTTGCACTTCTGGTGGGAGTAAGGCTCCCCTTGGATATGTTGAAACTGATCCATCTGGTCGATATGGTCGATTCAAGGACATTCTTGGCAGAGGAGCTATGAAAACTGTATACAGAGCATTTGATGAGTTCCTTGGGATTGAAGTGGCTTGGAACCAAGTCAAACTTGGTGATGTTTCTCATTCACCGGATCAACTTCAACGCCTTTATTCAGAAGTTCATCTTCTTAAGAACCTCGACCATAAGTCCATGATGATCTTCTATGGTTCTTGGATTGATATCAATGGCAAAACCTTCAACTTCATCACTGAATTGTTCACCTCCGGCACCCTTAGAGAGTATAGGAAAAAGTATAAGAAAGTAGATATTCGAGCATTGAAGAATTGGGCACGCCAGATTCTAAGTGGTTTGGAGTATTTACACAACAATAATCCTCCTGTGATACATAGAGACCTCAAATGtgataatatatttgtcaatgGCCATAAAGGAGAGATCAAGATTGGTGACTTAGGTCTTGCAGCTATACTTTGTAGATCCCAAGTTGCTCAAAGTGTCATAGGCAATGCCTCTagctcttttattttttGTACTCCGGAGTTTATGGCACCAGAACTATACGAAGAGAAATACAATGAACTTGTAGATATATATTCTTTTGGGATGTGTATGATAGAGATGTTTACACTTGAGTTTCCATACAGTGAGTGCTCAAACCCAGCTCAAATATACAAGAAAGTAACCGCGGGGAAGCTACCAAATGCATTTTTCAGAATCAAAGATTTAGAAGCACAAAGGTTTGTGGGAAGATGTTTAGCACATGTCTCAAAGAGACCATCAGCAAAAGAACTATTGTTGGACCCATTTTTTGCCAAGGAACAACTTGAACTGTCATTGCCAAACACAACATTATCTACAAATCAAACAAGTAGAAATATGACAATCACTGGGTCCATAAATGAAGAGGATAACACAATTTTTCTTAAAGTGCGGATATGTGATGTAATAGGGCAAACAAGGCATATATTCTTTCCATTTGACACAAACAATGACACTGCGATTAAGGTGGCAATGGAGATGGTAGAAGAACTTGAAATTAGTCACTTGGATCCATTAGAGATAGCTGCAATGATAGATAATGAGATATCAACATTATTTCCAACTTGGATGGGTACTCATGGTAAGTATGATCATCAACCACAATATAGCTTtaactatgaagaagatgatgatgaggatgttAATAACCACAATCCTTTTGTCTTGTCATCATCTTGTCCTTCTTCACCTCATGATTCTCTCACCAAGTCTATCTCTAAGACCCACTTTTGTGGGAAGCATGGCATGTTTCCTCAAGAATGGAATCAAGATCTATTTATTAATGATGATGGAAGCTCTCCAAGCTCAATGAACTCCTATAGGTGTTCAAATATCCAATATCATGAAGATGAGCATTGTCCAACAATAGTAGAAGAAGTCATAGCCAAGCATAACAATCTAAATTGCACAAGATCATGCCAAATAGAAGAGGGGGAAACAAGTAATTTCACTAAACAATTTTTGTACCCGAAAATGGACTCCTATGGTGGTTGTAGATGTGGTGGTGGCCATGGGTCGAGCCACCACAACTTGTcaaggaaaacaaaaaatcgTTTAAACATGGACGTGCATAGGAGCTTGCAACTTCAACGATCACAACTATTGGAGGAGGTGTATAAGAGACGGATGTTCAACACAATTTCCACCATGGAGGGAATTGGATTTCAATATCCGGATGGACGTTGTACTCGTTGA 1809 0.3759 MYKGRFCTSGGSKAPLGYVETDPSGRYGRFKDILGRGAMKTVYRAFDEFLGIEVAWNQVKLGDVSHSPDQLQRLYSEVHLLKNLDHKSMMIFYGSWIDINGKTFNFITELFTSGTLREYRKKYKKVDIRALKNWARQILSGLEYLHNNNPPVIHRDLKCDNIFVNGHKGEIKIGDLGLAAILCRSQVAQSVIGNASSSFIFCTPEFMAPELYEEKYNELVDIYSFGMCMIEMFTLEFPYSECSNPAQIYKKVTAGKLPNAFFRIKDLEAQRFVGRCLAHVSKRPSAKELLLDPFFAKEQLELSLPNTTLSTNQTSRNMTITGSINEEDNTIFLKVRICDVIGQTRHIFFPFDTNNDTAIKVAMEMVEELEISHLDPLEIAAMIDNEISTLFPTWMGTHGKYDHQPQYSFNYEEDDDEDVNNHNPFVLSSSCPSSPHDSLTKSISKTHFCGKHGMFPQEWNQDLFINDDGSSPSSMNSYRCSNIQYHEDEHCPTIVEEVIAKHNNLNCTRSCQIEEGETSNFTKQFLYPKMDSYGGCRCGGGHGSSHHNLSRKTKNRLNMDVHRSLQLQRSQLLEEVYKRRMFNTISTMEGIGFQYPDGRCTR 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01533 602 Pfam Protein kinase domain 31 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01533 602 Gene3D Phosphorylase Kinase; domain 1 14 109 - -
Tsu04g01533 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Tsu04g01533 602 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 598 - -
Tsu04g01533 602 Gene3D Transferase(Phosphotransferase) domain 1 111 302 - -
Tsu04g01533 602 PANTHER WNK KINASE 1 598 - -
Tsu04g01533 602 SMART serkin_6 28 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01533 602 CDD STKc_WNK 26 295 - -
Tsu04g01533 602 SUPERFAMILY Protein kinase-like (PK-like) 30 296 IPR011009 -
Tsu04g01533 602 ProSiteProfiles Protein kinase domain profile. 28 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01533 Tsu-Chr4 16133147 16138508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01533 9 416 MAP Kinase Kinase Kinase AT3G51630 62.269 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Tsu04g01533 Pkinase 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01533 K08867 - gmx:100272206 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01533 04 16133147 16138508 Tsu04g01533 04 16133147 16138508 ECH
Tsu04g01533 04 16133147 16138508 Tsu06g00752 06 6673188 6678748 PCT