Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01522 ATGGAACAGAAGGGAAGTGTGTTAATGCAAAAATATGAGCTGGGAAGATTATTAGGCCAAGGAACGTTTGCGAAGGTCTACCATGCTAGGAACCTTGTAACTGGCATGAATGTGGCCATTAAGGTAGTTGATAAAGAAAAGGTTTTGAAAGTCGGGATGGTTGATCAGATTAAGCGTGAAATTTCAGTGATGAGATTAGTAAGACACCCAAATGTTGTCGAGCTTTACGAGGTAATGGCgactaaaaccaaaattttcattGTCATGGAGTATGCAAAAGGTGGCGAGCTCTTCAACAAGATAGCTAAAGGAAAGCTCAAGGTTGACGTTGCTAGGAGATATTTTCAGCAGCTGATTAGTGCAGTCGACTTCTGCCACAGCAGGGGTGTGTATCATCGAGATTTGAAACCCGAAAATCTACTATTGGATGAAAATGATAATTTGAAGGTTTCGGATTTTGGTTTGAGTACCCTTTCTGAATCTAAGTGCCAGGATGGATTACTTCACACTACATGTGGTACGCCTGCGTATGTTGCTCCTGAAGTGATAAATCGAAAGGGCTATGAGGGATGCAAAGCTGATATTTGGTCGTGCGGCGTAATCTTGTTTGTTCTATTGGCTGGTTATCTTCCATTCCATGATCAAAATCTGATGGAGATGTACAGGAAAATCGGTAAAGGGGAAGTCAAATTTCCTAAATGGTTTGCACTTGAGGTTCGCCGGTTGTTGTCCAAAATATTGGATCCAAATCTAAAGACTCGGATATCAATGGCCAAGATCATGGAAAATTCTTGGTTTAAAAAGGGATTAGAGAAGCCTGTTGTTATCAATATCGAAAAAAATGAACTAGCTTCTCTGCACACTGATGGAGTGTTCGAAGTGTCCGACAACGGAAGTGATTCTAATACGGAGTCAAAACAACAACAGGCCAAACCCTGTAACAACTTAAACGCCTTTGATATCATCTCCTTCTCGTCTGGTTTTGATTTATCCAGCTTGTTCGAAGACACAattcaaaagaaagagatgCGGTTTACATCCAACAAGCCGGCTTCAATTATAATCTCTAAGTTCGAAGAAATTTGCAAGTGTCTTCGCTTGAAAATTACGAAAAAAGATGGAGGTTTGTTGAAGCTGGAAAGTTCAAAGGAAGGAAGGAAAGGGACTCTGAATATTGATGCCGAGATTTTTGAGATTACACCTCTTTTCCATCTTGTGGAACTTAAGAAGTCCGATGGCGATACTGTGGAGTATCAGAAGCTTTTGCAACAGGAGATTAGACCAGCACTTAAGGACATTGTGTGGAATTGGCAAGGAGAACAACCTCATGAACTCCAACATGAAGCAGTACTGGAGGAGCAACCAACAACCATCTCTTACTGA 1383 0.402 MEQKGSVLMQKYELGRLLGQGTFAKVYHARNLVTGMNVAIKVVDKEKVLKVGMVDQIKREISVMRLVRHPNVVELYEVMATKTKIFIVMEYAKGGELFNKIAKGKLKVDVARRYFQQLISAVDFCHSRGVYHRDLKPENLLLDENDNLKVSDFGLSTLSESKCQDGLLHTTCGTPAYVAPEVINRKGYEGCKADIWSCGVILFVLLAGYLPFHDQNLMEMYRKIGKGEVKFPKWFALEVRRLLSKILDPNLKTRISMAKIMENSWFKKGLEKPVVINIEKNELASLHTDGVFEVSDNGSDSNTESKQQQAKPCNNLNAFDIISFSSGFDLSSLFEDTIQKKEMRFTSNKPASIIISKFEEICKCLRLKITKKDGGLLKLESSKEGRKGTLNIDAEIFEITPLFHLVELKKSDGDTVEYQKLLQQEIRPALKDIVWNWQGEQPHELQHEAVLEEQPTTISY 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01522 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Tsu04g01522 460 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01522 460 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Tsu04g01522 460 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
Tsu04g01522 460 CDD CIPK_C 317 431 - -
Tsu04g01522 460 Gene3D Kinase associated domain 1, KA1 311 436 - -
Tsu04g01522 460 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01522 460 Gene3D Transferase(Phosphotransferase) domain 1 92 272 - -
Tsu04g01522 460 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Tsu04g01522 460 PANTHER - 2 447 - -
Tsu04g01522 460 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01522 460 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Tsu04g01522 460 CDD STKc_SnRK3 11 265 - -
Tsu04g01522 460 Pfam NAF domain 314 371 IPR004041 GO:0007165
Tsu04g01522 460 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 2 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01522 Tsu-Chr4 15941741 15945359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01522 1 441 CBL-interacting serine-threonine protein kinases AT5G58380 66.225 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Tsu04g01522 Pkinase 1.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01522 K07198 - gmx:100803787 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01522 04 15941741 15945359 Tsu04g01522 04 15941741 15945359 ECH
Tsu04g01522 04 15941741 15945359 Tsu05g02989 05 40231889 40233283 ECH
Tsu04g01522 04 15941741 15945359 Tsu03g00784 03 7136311 7138994 ECH