Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01513 ATGAACAAAGCTTCAATTATAGTAGACGCCTCCAAATACATACAAGATTTGAAGCAAAAAGTGGAAGGATTAAACTCTGAGTTAGGAATTGTTGAATCATCAACCCCTCAAATGGATGAGCAACCTAAGgtgAGTGTGAAATCCCTAGAAAAGGGTTTCCTAATCAATGTGCTTTTAGAAAAGAATAGACCTGGTATGTTAGTGTCAATACTAGAAGCTTTTGAAGATCTGGGACTTGAAGTGCTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTAGAAGCTGTAGGAGGAGATAGTCACAAGGACGACAGTATGAATGAGCAAGTGGTGAAGCAAGCAGTGTTGCAAGCTATCAAGAACACGGACGACTAA 378 0.3968 MNKASIIVDASKYIQDLKQKVEGLNSELGIVESSTPQMDEQPKVSVKSLEKGFLINVLLEKNRPGMLVSILEAFEDLGLEVLDARVSCEDTFQLEAVGGDSHKDDSMNEQVVKQAVLQAIKNTDD 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01513 125 CDD ACT_UUR-ACR-like 61 120 - -
Tsu04g01513 125 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 124 - -
Tsu04g01513 125 ProSiteProfiles ACT domain profile. 55 125 IPR002912 -
Tsu04g01513 125 Coils Coil 7 34 - -
Tsu04g01513 125 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01513 Tsu-Chr4 15800420 15803835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01513 1 118 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 26.562 6.48e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01513 - - mtr:MTR_7g072470 218.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01513 04 15800420 15803835 Tsu05g03410 05 45405925 45408912 ECH
Tsu04g01513 04 15800420 15803835 Tsu04g01513 04 15800420 15803835 ECH
Tsu04g01513 04 15800420 15803835 Tsu03g00796 03 7256346 7257790 ECH