Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01506 ATGGCAGATCCTGCTAGTAATGGAGGCCTTGAGAGAGATATTGAACAAGCACTCTTTGTTTTGAAGAAAGGATCTCAATTAATAAAGTATAGCCGAAAAGCGAAGCCGAAAGTTTGCCCTTTCAGACTCTCCTTGGATGAAACAACACTGATTTGGATTTCTCATAAAAGGGAAAGGACTCTAAAATTATCTTTGGTTTCGCGCATTATTCCTGGACAAAGAACTATTGTCTTTAGAAGATATTTGCAACCAGAAAAGGATTATCTCTCATTTTCACTTGTTTATAATAACGGAGAACGGACACTTGATCTGATATGCAAGGATAAAGCTGAGGCAGAGGTGTGGTTTGCAGGGCTTAAGGCATTAATTTCCCCTGGAAGGCAAAATAGGCTAACTGGAAGTGAATTATCATATGATGGTGCTGATTTTACTCCGAAAAGTCGCCCTTTTGGTGCAGCATTAGAGTTTGCTTCAAGTCTTTCTCGTGGTAGGCTCTCGACTGATTCATTTCCTCGTGAGTCTCCATTGTATCGGACGAACTCAGATGTGGGATTAGATCATACAAATATGCAAGGAAGGACAAGTATTGGAGATGGTTTTCGGGTTAGTGTGTCTAGTACACCTAGTTGTTCAAGTGCAGGATCAGGACCTGATGACATAGAGTCATTAGGAGATGTTTATATATGGGGAGAAGTTTGGGCCGATGTGGTTTCACCCGATGGAACTGGTGTTCAATTCCCTTCCACCACAGATGTATTGGTTCCTAAGCCTTTAGAGTCAAGTGTTGTTCTTGATGTTCAACAGATTGCGTCTGGTGTGCGTCACATGGCTTTAGTTACCCGGCAAGGAGAAGTTTTCACTTGGGGAGAGGAATCTGGTGGAAGACTTGGTCATGGAATCGATAAAGATTTCGGTCGCCCTCAACTTGTTGAGTTTCTAGCGGTTACTAATGTTGAGATTGTTGCATGTGGAGAGAATCATACATGTGCTGTATCAATTTCGGATGAACTATTCTCATGGGGTGATGGTAAATATAATGTTGGACTTCTCGGACACGGTACCGATGTTAGCCATTGGATACCAAAGAGAATTAGCGGTCCTTTGGAAGGACTTCAAGTTACATCTATTGCATGTGGTACATGGCATTCAGCATTGGCAACTTCTAACGGAAAACTTTTCACTTTCGGTGATGGAACATTTGGTGTATTGGGTCATGGAAATAGAGAGAGTGTTTCATATCCAAAAGAGGTTCAATTGTTAAGTGGATTGAAGACTATTAAGGTTGCATGTGGAGTATGGCATACCGCAGCTATTGTAGAGGTTACTTTTCAATCAGGTTCAAATGTTTCATCTCGAAAGCTCTTCACTTGGGGAGACGGAGACAAATATCGTTTAGGACATGGAAACAAGGAAACATACCTTCAACCTACTTGTGTCTCAACACTCATTGAATATAATTTCCACCAGATTGCATGTGGACACACTATGACTATTGCTCTTACTACTTCTGGACATTTATTTACTATGGGAGGCACTGAACATGGTCAACTAGGAAATTCTTCGTCCGATGGAAAAATACCTATACTAGTACAAGACACATTGGTGGGTGAATTTGTTGAGGAAATATCATGTGGAGCTCATCATGTTGCTGCTTTGACTTCAAGGAGTGAATTATTTACTTGGGGTAAAGGTGCAAATGGAAGATTGGGACATGGAGATATAGATAATAGAAAATCTCCTACATTGGTTGAAGCTTTGAAAGAAAGGCATGTCAAAAACATTTCTTGTGGCTCAAGTTTCACGTCTTGCATATGCATTCATAAGTGGGTATCTGGAGTTGACCAATCCGCTTGCACCGGTTGTAGACAACCCTTTGGTTTTACTCGGAAAAGGCATAATTGTTATAATTGTGGATTAGTACATTGTCATGGTTGTAGTTCAAGAAAAGTTATGAAAGCAGCATTGGCTCCAACACCAGGAAAGCCTCACCGTGTATGTGATTCTTGCTACGCTAAGCTTAAAGCTGTTGAGGCAAACGCTTTTTCAAATCTTAATAGAAAAATTACTACTACACAACCTCGCAGTTCTATCGATGGAAGGGAAAGATTTGGCCAAGGTGAAATAATTAGGTCTACAAAAATTCTTTTTCCGCCTTTCTCAAGCTCAGAACCACTAAAATATCTTGAGATGAGGACTAATATGCTCGGAAATCCTTCCATGCTATCAGCTTCTCAAATTCCATCCCTTACACAAATGAAAGACATGTCATTTCCAAGTTCAACAACTCCCATTCAAAATGGTATGAAACTTAATATAGCTCCAACTCCACCAGCAACTCCACCTCTTAGTTCAAGATCAGTATCCCCGTATACGAGAAGGCCAAGTCCGCCACGTTCTTCCAATCCGGGATTTTCAAGAAGTCTTATTGATagcttgaagaaaacaaatgagcTTTTGAACCAAGAAGTCTCAAAATTGCAGAACCAAaATCGAAGTTTGAAGCAAAAAAGTATCATGGAAATTCAAAAGCTACAGAAAAACATTAAGGATACCACCTCATTGGCTGAAGAAGAATCTTCTAAACATAAAGCAGCCAAAGAAAATCTCGAGTCCATCATAGTTCAGATCAAGGAAATGGCTGAGCAATTTCCACCAGaagttttagagaatgaaaaatttaaaaacatgctTATTCAAGCTGAAATTTTTCTAAATGGAAATTCAAAATCTGAAACATCTTCTGTCGTACCATCAATTTCGGACTCTGAGCAACAAAGTGAACCTGTTTCAAACAATGGTTCATATGAACAGAAAGAGCGAACAGAAGAAAATAACGAAGATGCAGAAGTTAATCCATCTCAAGATGCAGGAAATGTCTTTCAAGAAAGCAATGGAGCATCTTCATCTAATACTGAAGGAACAACGACACCATCACAAAAGTCTGAAAAGGATTCAAAATCATTGAACCCTTCAAGATCAATGAACGAAGGAGAAACACAAATCATTGAACAATTTGAACCAGGCGTTTATGTGACACTAGTAGTAAAGCCTAATGgtaacaaaattttcaaacgTGTTAGATTCAGtAAAAGAAGGTTTCATGAACATCAAGCAGAAGAATGGTGGAATACAAACAAAGATAGGGTTCTTCGGAGATATAGTCCGCAagcaaaaaatcttcaaggtgTAGTGCCGTCATCTAGCAATACCGCACCACCACCTGCTGGAGAAAACATTAATCCTGAAGGTGTGGCGTCATCTAGTAGtactccaccaccaccacctacCGAAGAAAACATTGAGGCAACACCTTCTTAA 3318 0.3858 MADPASNGGLERDIEQALFVLKKGSQLIKYSRKAKPKVCPFRLSLDETTLIWISHKRERTLKLSLVSRIIPGQRTIVFRRYLQPEKDYLSFSLVYNNGERTLDLICKDKAEAEVWFAGLKALISPGRQNRLTGSELSYDGADFTPKSRPFGAALEFASSLSRGRLSTDSFPRESPLYRTNSDVGLDHTNMQGRTSIGDGFRVSVSSTPSCSSAGSGPDDIESLGDVYIWGEVWADVVSPDGTGVQFPSTTDVLVPKPLESSVVLDVQQIASGVRHMALVTRQGEVFTWGEESGGRLGHGIDKDFGRPQLVEFLAVTNVEIVACGENHTCAVSISDELFSWGDGKYNVGLLGHGTDVSHWIPKRISGPLEGLQVTSIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESVSYPKEVQLLSGLKTIKVACGVWHTAAIVEVTFQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTMTIALTTSGHLFTMGGTEHGQLGNSSSDGKIPILVQDTLVGEFVEEISCGAHHVAALTSRSELFTWGKGANGRLGHGDIDNRKSPTLVEALKERHVKNISCGSSFTSCICIHKWVSGVDQSACTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVMKAALAPTPGKPHRVCDSCYAKLKAVEANAFSNLNRKITTTQPRSSIDGRERFGQGEIIRSTKILFPPFSSSEPLKYLEMRTNMLGNPSMLSASQIPSLTQMKDMSFPSSTTPIQNGMKLNIAPTPPATPPLSSRSVSPYTRRPSPPRSSNPGFSRSLIDSLKKTNELLNQEVSKLQNQNRSLKQKSIMEIQKLQKNIKDTTSLAEEESSKHKAAKENLESIIVQIKEMAEQFPPEVLENEKFKNMLIQAEIFLNGNSKSETSSVVPSISDSEQQSEPVSNNGSYEQKERTEENNEDAEVNPSQDAGNVFQESNGASSSNTEGTTTPSQKSEKDSKSLNPSRSMNEGETQIIEQFEPGVYVTLVVKPNGNKIFKRVRFSKRRFHEHQAEEWWNTNKDRVLRRYSPQAKNLQGVVPSSSNTAPPPAGENINPEGVASSSSTPPPPPTEENIEATPS 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01506 1105 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 428 438 IPR000408 -
Tsu04g01506 1105 Gene3D - 451 620 IPR009091 -
Tsu04g01506 1105 Gene3D - 201 450 IPR009091 -
Tsu04g01506 1105 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 13 1061 - -
Tsu04g01506 1105 MobiDBLite consensus disorder prediction 1056 1105 - -
Tsu04g01506 1105 Coils Coil 931 951 - -
Tsu04g01506 1105 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1061 - -
Tsu04g01506 1105 CDD FYVE_like_SF 617 670 - -
Tsu04g01506 1105 SMART fyve_4 606 675 IPR000306 GO:0046872
Tsu04g01506 1105 CDD PH_PLC_plant-like 12 124 - -
Tsu04g01506 1105 Pfam Transcription factor BRX N-terminal domain 857 893 IPR027988 -
Tsu04g01506 1105 Pfam FYVE zinc finger 608 674 IPR000306 GO:0046872
Tsu04g01506 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 504 555 IPR000408 -
Tsu04g01506 1105 ProSiteProfiles BRX domain profile. 999 1054 IPR013591 -
Tsu04g01506 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 452 503 IPR000408 -
Tsu04g01506 1105 Coils Coil 809 836 - -
Tsu04g01506 1105 Pfam Transcription factor regulating root and shoot growth via Pin3 999 1053 IPR013591 -
Tsu04g01506 1105 MobiDBLite consensus disorder prediction 1087 1105 - -
Tsu04g01506 1105 MobiDBLite consensus disorder prediction 909 935 - -
Tsu04g01506 1105 MobiDBLite consensus disorder prediction 754 769 - -
Tsu04g01506 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 335 389 IPR000408 -
Tsu04g01506 1105 MobiDBLite consensus disorder prediction 1059 1086 - -
Tsu04g01506 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 335 385 IPR000408 -
Tsu04g01506 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 503 552 IPR000408 -
Tsu04g01506 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 283 331 IPR000408 -
Tsu04g01506 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 389 438 IPR000408 -
Tsu04g01506 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 454 500 IPR000408 -
Tsu04g01506 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 557 604 IPR000408 -
Tsu04g01506 1105 MobiDBLite consensus disorder prediction 950 996 - -
Tsu04g01506 1105 PRINTS Chromosome condensation regulator RCC1 signature 285 301 IPR000408 -
Tsu04g01506 1105 PRINTS Chromosome condensation regulator RCC1 signature 335 351 IPR000408 -
Tsu04g01506 1105 PRINTS Chromosome condensation regulator RCC1 signature 376 392 IPR000408 -
Tsu04g01506 1105 PRINTS Chromosome condensation regulator RCC1 signature 392 406 IPR000408 -
Tsu04g01506 1105 PRINTS Chromosome condensation regulator RCC1 signature 493 511 IPR000408 -
Tsu04g01506 1105 PRINTS Chromosome condensation regulator RCC1 signature 551 572 IPR000408 -
Tsu04g01506 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 283 334 IPR000408 -
Tsu04g01506 1105 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 612 674 IPR017455 -
Tsu04g01506 1105 Coils Coil 841 882 - -
Tsu04g01506 1105 Gene3D - 11 130 IPR011993 -
Tsu04g01506 1105 SUPERFAMILY RCC1/BLIP-II 223 609 IPR009091 -
Tsu04g01506 1105 MobiDBLite consensus disorder prediction 754 807 - -
Tsu04g01506 1105 SUPERFAMILY PH domain-like 13 123 - -
Tsu04g01506 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 390 441 IPR000408 -
Tsu04g01506 1105 MobiDBLite consensus disorder prediction 909 996 - -
Tsu04g01506 1105 MobiDBLite consensus disorder prediction 784 807 - -
Tsu04g01506 1105 SUPERFAMILY FYVE/PHD zinc finger 608 677 IPR011011 -
Tsu04g01506 1105 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 680 IPR013083 -
Tsu04g01506 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 556 607 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01506 Tsu-Chr4 15721963 15726501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01506 995 1069 Major Intrinsic Protein MIP AT1G31880 35.526 4.27e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01506 - - gmx:100779684 1540.78