Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01494 ATGGGTGTAATGTCTGAAAAACCCCTTCATGAACTTCCTTTGCACTCTACAGACACCACATTTTCTCCTCCTTCATCTAAGAGgttgGAAGGAAAAATTGCTATTGTAACAGGGGGAGCCAGAGGAATTGGAGAAGCAACAGTGagaatttttgtgaaaaatggTGCAAAAGTAGTAATtgctgatgttgaagatgaacttgGAACCATGCTTGCAAATTCACTCTCACCATTAGCTACCTACATCCATTGTGATGTTAGCATTGAAAATGATGTTGAAAATTTAGTCACTTCAACAGTTTCTCGCTACGGAAAACTCGACATCATGTTCAACAATGCTGGTGTTCTTGGAAACCAATCCAAGAACAAAAGCATTGTGAACTTCGATGTCGAGGAACTCGACCGAGTCATGAGTGTTAATGTTAAAGGAGTAGCTTTAGGGATGAAACATGCTGCAAGAGTTATGATTCCAAGAAGATTTGGTTGCATAATTTCTTCAGCTAGTGTAGCTGGAATTTTAGGAGGACTTGGTCCACATGCTTATACAGCTTCAAAGCATGCTATAGTTGGATTAACAAAAAACACTTCTTGTGAATTAGGGAAATATGGGATTAGGGTTAATTGCATTTCACCATTTGGTGTTGCAACTTCTATGCTTGTGAATGCTTGGAGAAAAGGGGATGATAATGaagttgatgatgataatgaaataAACTTTGGATTACCTTTAATTGAAGAGGTTGAGAAAATGGAGGAATTTGTTAGAGGGATTGGTAATTTGAGAGGAACAACTTTAAGGGCTCAAGATATTGCTGAGGCTGTTCTTTTTCTTGCTAGTGATGAATCTAAGTATGTTAGTGGTCATAATCTTGTTGTGGATGGTGGAGTTACTTCCTCAAGAAATTGTATTGGATTGTGA 918 0.3573 MGVMSEKPLHELPLHSTDTTFSPPSSKRLEGKIAIVTGGARGIGEATVRIFVKNGAKVVIADVEDELGTMLANSLSPLATYIHCDVSIENDVENLVTSTVSRYGKLDIMFNNAGVLGNQSKNKSIVNFDVEELDRVMSVNVKGVALGMKHAARVMIPRRFGCIISSASVAGILGGLGPHAYTASKHAIVGLTKNTSCELGKYGIRVNCISPFGVATSMLVNAWRKGDDNEVDDDNEINFGLPLIEEVEKMEEFVRGIGNLRGTTLRAQDIAEAVLFLASDESKYVSGHNLVVDGGVTSSRNCIGL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01494 305 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 169 IPR002347 -
Tsu04g01494 305 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 181 200 IPR002347 -
Tsu04g01494 305 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 104 115 IPR002347 -
Tsu04g01494 305 MobiDBLite consensus disorder prediction 1 25 - -
Tsu04g01494 305 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2A-LIKE 9 305 - -
Tsu04g01494 305 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 9 305 - -
Tsu04g01494 305 PRINTS Glucose/ribitol dehydrogenase family signature 104 115 IPR002347 -
Tsu04g01494 305 PRINTS Glucose/ribitol dehydrogenase family signature 181 200 IPR002347 -
Tsu04g01494 305 PRINTS Glucose/ribitol dehydrogenase family signature 202 219 IPR002347 -
Tsu04g01494 305 PRINTS Glucose/ribitol dehydrogenase family signature 33 50 IPR002347 -
Tsu04g01494 305 PRINTS Glucose/ribitol dehydrogenase family signature 155 171 IPR002347 -
Tsu04g01494 305 PRINTS Glucose/ribitol dehydrogenase family signature 260 280 IPR002347 -
Tsu04g01494 305 Pfam Enoyl-(Acyl carrier protein) reductase 249 297 - -
Tsu04g01494 305 CDD secoisolariciresinol-DH_like_SDR_c 28 297 IPR045309 GO:0016616
Tsu04g01494 305 Gene3D - 20 303 - -
Tsu04g01494 305 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 30 297 IPR036291 -
Tsu04g01494 305 Pfam short chain dehydrogenase 32 222 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01494 Tsu-Chr4 15380611 15381989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01494 15 296 Acyl Lipid Metabolism Gene Families AT1G24360 26.298 2.93e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01494 - - gmx:100775210 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01494 04 15380611 15381989 Tsu04g01494 04 15380611 15381989 ECH
Tsu06g00772 06 6879587 6885560 Tsu04g01494 04 15380611 15381989 PCT