Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01492 ATGGCTTCTACTAAAAGCATAATCCAAAGCAAAAGCAACAGCAACAGCAGTATCATCCCTTTGGAAGAGAAATTCGCTTATGATGTTTTTGTCAGCTTTAGAGGAACAGACACACGATGCAATATCATCGATCATCTTTTTGCTGCCTTCAAAAGAAAAGGAATTGTTCCATTCAAGGATGATAAAAATCTCAAGAAAGGTAAACCTATAGCACCCGGGCTCCTTCGCGCAATTGAAGGATCTCATATCTTCATAGTGGTTTTCTCAAAGAACTATGCTTTCTCAACATGGTGCTTGCAAGAACTTGATCAGATCCTTTGTTTTGCTCTAATATCTGGAAGACTTGTTCTGCCTATTTTCTATGATGTTGATCCTTCTGAGGTGAGACATCAAAAAGGAAGGTATGCTAAAGCCTTTGAAAAACATGAAGAAAGGCTTAAGCATGACTTAGAGGTTGTAACAAGATGGAGAACAGCTCTGAGACAAGTGGCCAATATCACTGGCTGGGATTTACGCCACAAGTATCAAAGTGCCGAGATTGAAAAGATTGCTCAACATATAATGGATTTACTGGGTCACAAGTTTTTAAGCCTTCCGAAAGATTTAGTGGGGATGACTTCTCCTTTAGAAGAATTagaaaaacttttatttttggattCGGCTAATGATGTTCAGGTTGTAGGAATTTACGGGGTGAGAGGAATCGGGAAATCAACTCTTGCAGCTGTTTTATATAACAAGATCTTTCATGAATTTGAAGTATGTTGCGTTATTGAAGATGTAAGCACAATTTATAGAGCCGATGGCCCAATTGGTGTACAAAAGCAAATTCTACGTCAAATTCTAAAGGAAGAACACCTTCGGGTATGCAATCCTTATGAGGCAACTAATTTGATACGAAGTAGGATGCTTCATCTAAAGGTCCTAGTAATTCTTGATAATGTTGATCGAATTGAACAACTGGAGAAATCAGCCGTAAATCGTGAATGTTTTGCTGCAGGGAGTAGAATCATTATAATTTCTAGATATGAGCACATCTTGAAAGAGTATGCAGTGGATGAAGTTTACAACGTTCCACTCTTGAATCAAATTGATTCTATTCAATTATTATTCTATCAAAAAGCTTTCAAATGTGCTGATATTACTAGTTATGATGAACAATTGGCATGTGACATGCTACATTATGCAAATGGCATACCTCTAGCAATTAAAATATTAGGTTCATTTTTGTTTACCTTACATACCTCCAAATGGAAAAGTGCATTGGTTAGATTGAGAGAAAGTCCAAACGAAAATATTATAGATGTCTTGCAATCAAGGTACAAATATCCACTACGACCAACGATGTATCCCTACAACAGACGCTGTCGCGATCAAACCAATTGTACTGTTGTGGATGTTCACCAAAGGGGTGATAATCATTACATGGAGCAAAGGTGCATACACGGTTATCCCGTGCAACCTTCACAATTGTCCTACTCGAACCCGTTTGGATCTGAGTTTAACTCTCCTTTTCTTATGTTCAATGATGAGAACCCTAATTCTTGTTCCATCAcgtga 1560 0.3724 MASTKSIIQSKSNSNSSIIPLEEKFAYDVFVSFRGTDTRCNIIDHLFAAFKRKGIVPFKDDKNLKKGKPIAPGLLRAIEGSHIFIVVFSKNYAFSTWCLQELDQILCFALISGRLVLPIFYDVDPSEVRHQKGRYAKAFEKHEERLKHDLEVVTRWRTALRQVANITGWDLRHKYQSAEIEKIAQHIMDLLGHKFLSLPKDLVGMTSPLEELEKLLFLDSANDVQVVGIYGVRGIGKSTLAAVLYNKIFHEFEVCCVIEDVSTIYRADGPIGVQKQILRQILKEEHLRVCNPYEATNLIRSRMLHLKVLVILDNVDRIEQLEKSAVNRECFAAGSRIIIISRYEHILKEYAVDEVYNVPLLNQIDSIQLLFYQKAFKCADITSYDEQLACDMLHYANGIPLAIKILGSFLFTLHTSKWKSALVRLRESPNENIIDVLQSRYKYPLRPTMYPYNRRCRDQTNCTVVDVHQRGDNHYMEQRCIHGYPVQPSQLSYSNPFGSEFNSPFLMFNDENPNSCSIT 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01492 519 SUPERFAMILY Toll/Interleukin receptor TIR domain 23 169 IPR035897 -
Tsu04g01492 519 ProSiteProfiles TIR domain profile. 25 191 IPR000157 GO:0007165
Tsu04g01492 519 SMART till_3 26 166 IPR000157 GO:0007165
Tsu04g01492 519 Gene3D - 25 190 IPR035897 -
Tsu04g01492 519 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 27 437 - -
Tsu04g01492 519 Pfam NB-ARC domain 217 431 IPR002182 GO:0043531
Tsu04g01492 519 Gene3D - 191 355 IPR027417 -
Tsu04g01492 519 PRINTS Disease resistance protein signature 302 316 - -
Tsu04g01492 519 PRINTS Disease resistance protein signature 226 241 - -
Tsu04g01492 519 PRINTS Disease resistance protein signature 396 410 - -
Tsu04g01492 519 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 437 IPR044974 GO:0006952
Tsu04g01492 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 442 IPR027417 -
Tsu04g01492 519 Gene3D - 361 443 IPR042197 -
Tsu04g01492 519 Pfam TIR domain 26 193 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01492 Tsu-Chr4 15337866 15339686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01492 27 409 WRKY Transcription Factor Family AT4G12020 26.615 2.64e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01492 - - cam:101512606 610.527