Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01484 atgttgtCTACGATTTCAGGTTCAGAATATTTAgtgaatattaatattataattttgtggTGTTTTGTGGCTTTGAATTGCTTTCTTCAAGAGTTTGGATCCAATGCTCAACTCATACCACAAGATGAAGTAAAATCACTACAAGTAATATCAGATAAACTAAATAACGTGAATTGGAAAGTCACAGAACGTTCCTGCACTGATGATGGAGGCTTCAATAATGACAATATTAATACAGATAATGACATGGTCAGGAATGTCACATGCGATTGCAATTTCCAAAATAACACTGTTTGTCATGTTACAAGCATATATCTTAAGGGCCAAATTATAGCTGGAGTTATTCCTAGTGAATTTGGAAATCTTACTCAATTGAAAGTACTTGATCTCACTCGTAACTATCTCAATGGCTCAATTCCGACGAGCTTTGCTAGAAATTCTCTAGTTATTTTGTCGCTTTCCAGAAACGGATTAAGTGGTCCAATTCCCACAGAAATTGGTGATATTGCTAGCTTGGAGGATCTGGTCTTGGAAAATAATCAACTAGGTGGACCACTTCCTCCTAGTCTTGGAAATTTGAGCAAGTTGAAGAAACTGCTTCtttcttcaaataattttaCAGGGACAATACCAGAATCATTTAGCAAACTAAAGAATCTCACTGATTTTAGTATAGATGGAAGCAGTTTATCTGGACAGATACCTAGTTTTATTGGAAACTGGACCAAACTTGACACATTGAATATGCAAGGAACGTCTATGGAAGGTCCTATTCCATCCACCATATCTGGGTTGAAACTTTTGACGGAGTTGAGAATATCTGATTTGACAGAATCAACTATGACATTTCCTAATCTGAAGGATATGAAAATCTTGCAACTTCTGGAATTGAGAAATTGCTTAATCACAGGTCCTATTCCTGATTACATTGGTGAAATGGAAGGTTTAGTTACTTTAGATCTAAGCTTCAATATGTTGACTGGTTCAATCCCAAATTCAATTCAGGGCTTGAAAAACCTTGATTACATGTTTTTGACGAATAATTCTTTAAGTGGACCGATTCAAGACTGGATACTGAACTTCAATGCTAACATAGATTTATCTTACAACAATTTTACAAAGTCTTCTGCAACTAGCTGCCAGCAGTCGAATCTGAACTTGGCTTCAAGCCAATCGTCTTCATCAGTCACTTCACCTTCAATGTTTTGTTTGAAGAGGAACCTTCCTTGTGCAGGAAAACCTCAGTATAATTCATTGTTCATAAATTGCGGAGGACCTCAAGCAGATTATGATGGAAATCACTTTTTTGGTGATCTGCAAAAAGATGgcatttcaaattttgttcttAGAAATGAAGGAGAATGGGCTTATAGCAGCACGGGAGTGTATACGGGAAATGTTAATGCAGATTATACGGCATCAAATACATATTCTTTGAATATTAATGGCTCAGAATACTATAATACCGCCCGTATTTCACCTCTGTCACTTAAATACTATGGCCTTTGTATGGAGAAGGGAAATTATAAAGTGAATCTCCATTTTGCTGAGATAATGTTTTCAGATGACAAGACTTTTAGTAGTCTTGGAAGACGCATATTTGACGTATCAATTCAAggttttaaatatttgaaagaTTTTAACATTATGGAAGAAGCTGGTGGAGTTGGAAAGGCCATCACTAAGGAATTTGATGTCGAAGTCATCGACAACACGTTGGAGATTCACTTATACTGGGCAGGGAAAGGAACCAATGCCATTCCTGTCAGAGGAGTATACGGACCTCTTATATCTGCTATCACGGTAACACCAAACTTTAAAAACCATTCAAAAGGGATGTCTGCTGGAGTTATTGTTGGAATTGTGGCTGCATCATGTATGCTTGTCATATTGATACTGGTTACCCTTTGGAAGATGGGTTTCATTGGCAGAAAAGATGTAAGAGACAAAGACCTTCTTGATCTGAAAACTGGTTATTTCAGCTTAAGACAAATTAAAGCAGCCACTAATGACTTTAACCCTGCAAATAAGATTGGTGAAGGGGGATTTGGACCAGTATACAAGGGTATTCTGTCAAATGGTGATGTCATTGCTGTTAAGCAACTCTCCTCCAAATCAAATCAAGGGAACCGTGAATTTGTTAATGAAATCGGAATGATATCGGCTTTGCAACATCCAAATCTTGTTAAGCTCTATGGTTGCTGCATTGAAGGAAAGCAGTTGCTGCTGGTATATGAATACATGGAAAACAATTGTCTTTCGCGTGCACTTTTTGGTAGTCAAGAACAGAAGCTGCACTTGGATTGGCCTGCAAGAATGAAGATATGTCTTGGCATAGCAAAGGGATTAGCTTATCTTCATGAAGAATCAGCATTGAAAATAGTACACAGGGACATTAAGGCAAGTAATGTATTACTTGACAAGGATTTGAATGCCAAGATCTCTGACTTTGGTTTAGCTAAGCTTGATGAAGATGGGAATACCCATATCAGTACACGGATAGCAGGAACAATTGGATACATGGCTCCGGAATATGCTATGCGGGGTTACTTGACTGATAAGGCAGATGTATATAGCTTTGGTGTTGTAGCTTTAGAGATTGTTAGCGGAAAAAGCCATACAAATTTCAATCCAATGGAGGAGTTTGTATATCTTCTGGATTGGGCATGTGATCTCCAAGAGCAAGGAAACATTTTGGAGTTAGTGGATCCAAGTCTTCGTGGTTCAAGGTACTCCACAAAGGAAGCCATGAGAATGCTTAGTGTGGCATTCTTATGCACAAACACATCTGCCACTCTTAGGCCATCAATGTCATTGGTAGTAAGCATGCTTGAAGGAAAAACTCCGATCCAACCGACAGTAATCAATCGGAGGGAGAGCAGTCAACATAGACTCAAATCCTCCGAGCTTTTTTCACAAGATAGCCAAGCATCAGAAAATGGAACAAGGGTATACTCCTCCACATCTCTTCAAAGTGAAGACAATTTTTCTTCAAGCAGTAAACTTCCCATAGTTTCACAGGATGTTTCACGGCACACTAAGTCGTTTTATGAAGGTGATAGTTATAGTGTATGA 3075 0.374 MLSTISGSEYLVNINIIILWCFVALNCFLQEFGSNAQLIPQDEVKSLQVISDKLNNVNWKVTERSCTDDGGFNNDNINTDNDMVRNVTCDCNFQNNTVCHVTSIYLKGQIIAGVIPSEFGNLTQLKVLDLTRNYLNGSIPTSFARNSLVILSLSRNGLSGPIPTEIGDIASLEDLVLENNQLGGPLPPSLGNLSKLKKLLLSSNNFTGTIPESFSKLKNLTDFSIDGSSLSGQIPSFIGNWTKLDTLNMQGTSMEGPIPSTISGLKLLTELRISDLTESTMTFPNLKDMKILQLLELRNCLITGPIPDYIGEMEGLVTLDLSFNMLTGSIPNSIQGLKNLDYMFLTNNSLSGPIQDWILNFNANIDLSYNNFTKSSATSCQQSNLNLASSQSSSSVTSPSMFCLKRNLPCAGKPQYNSLFINCGGPQADYDGNHFFGDLQKDGISNFVLRNEGEWAYSSTGVYTGNVNADYTASNTYSLNINGSEYYNTARISPLSLKYYGLCMEKGNYKVNLHFAEIMFSDDKTFSSLGRRIFDVSIQGFKYLKDFNIMEEAGGVGKAITKEFDVEVIDNTLEIHLYWAGKGTNAIPVRGVYGPLISAITVTPNFKNHSKGMSAGVIVGIVAASCMLVILILVTLWKMGFIGRKDVRDKDLLDLKTGYFSLRQIKAATNDFNPANKIGEGGFGPVYKGILSNGDVIAVKQLSSKSNQGNREFVNEIGMISALQHPNLVKLYGCCIEGKQLLLVYEYMENNCLSRALFGSQEQKLHLDWPARMKICLGIAKGLAYLHEESALKIVHRDIKASNVLLDKDLNAKISDFGLAKLDEDGNTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSHTNFNPMEEFVYLLDWACDLQEQGNILELVDPSLRGSRYSTKEAMRMLSVAFLCTNTSATLRPSMSLVVSMLEGKTPIQPTVINRRESSQHRLKSSELFSQDSQASENGTRVYSSTSLQSEDNFSSSSKLPIVSQDVSRHTKSFYEGDSYSV 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01484 1024 Gene3D - 417 606 - -
Tsu04g01484 1024 MobiDBLite consensus disorder prediction 965 1008 - -
Tsu04g01484 1024 Pfam Leucine rich repeat 292 350 IPR001611 GO:0005515
Tsu04g01484 1024 Pfam Leucine rich repeat 100 158 IPR001611 GO:0005515
Tsu04g01484 1024 Gene3D Ribonuclease Inhibitor 184 279 IPR032675 -
Tsu04g01484 1024 MobiDBLite consensus disorder prediction 966 1008 - -
Tsu04g01484 1024 Gene3D Transferase(Phosphotransferase) domain 1 748 966 - -
Tsu04g01484 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Tsu04g01484 1024 Pfam Protein tyrosine and serine/threonine kinase 676 889 IPR001245 GO:0004672|GO:0006468
Tsu04g01484 1024 Pfam Malectin domain 418 600 IPR021720 -
Tsu04g01484 1024 Gene3D Phosphorylase Kinase; domain 1 641 747 - -
Tsu04g01484 1024 PANTHER - 79 972 - -
Tsu04g01484 1024 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 79 972 - -
Tsu04g01484 1024 SMART serkin_6 672 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01484 1024 CDD STKc_IRAK 678 946 - -
Tsu04g01484 1024 Pfam Leucine Rich Repeat 195 217 IPR001611 GO:0005515
Tsu04g01484 1024 SUPERFAMILY L domain-like 98 359 - -
Tsu04g01484 1024 Gene3D Ribonuclease Inhibitor 53 173 IPR032675 -
Tsu04g01484 1024 Gene3D Ribonuclease Inhibitor 280 402 IPR032675 -
Tsu04g01484 1024 SUPERFAMILY Protein kinase-like (PK-like) 656 945 IPR011009 -
Tsu04g01484 1024 ProSiteProfiles Protein kinase domain profile. 672 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01484 Tsu-Chr4 15257508 15269408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01484 17 1014 Receptor kinase-like Gene Family AT1G53440 58.655 0.0 1144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu04g01484 PK_Tyr_Ser-Thr 6.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01484 - - gmx:100815226 1440.25