Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01483 ATGTCAACGCCTTCACTCTCAGTCTTCGACGTTCTCATGTCCAGCGCACACGCCGCCGCCAAGAAGAAACATCTTCCCCCTTCCTCTTCACCTTCTCCATGCCCACTCCCCCCTCAGAAACcgttcatcttcttccatgcGGATGGTCAAGGTTCCACTGCTGAAGAAGAAACCACAGAATTTCGGTTGTTTGCTGGGAGAAAGGAGTCTGGAAAAGAGAGTCAAGGGAAGAAAATGAGTCGCATAATGACACTGCTTGTTGATTCAACTGACTGCGAACCTCGATATATAATCTGTTTGCTACAGGAAAAATTGCGACTTGGATATGACGAGCAAACTCTCTTAGCTGCATTAAGCCAAGCTGCATTGTACACCGAAGAACATTCCAAACCACCTCCTGAAATTCATTCTCCTTTACAAGAGGCTGAGAAGATTGTTAAAAAATCTACTCTGTTCTTCCTGATTATGACAAAATTGTGGCTGCAATCCTTACGGATGGTGTATGGGAACTTCAAAACAAGTGTGGTGTTACTCCTGGTGTTCAAGTAA 549 0.4335 MSTPSLSVFDVLMSSAHAAAKKKHLPPSSSPSPCPLPPQKPFIFFHADGQGSTAEEETTEFRLFAGRKESGKESQGKKMSRIMTLLVDSTDCEPRYIICLLQEKLRLGYDEQTLLAALSQAALYTEEHSKPPPEIHSPLQEAEKIVKKSTLFFLIMTKLWLQSLRMVYGNFKTSVVLLLVFK 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01483 182 Pfam DNA ligase N terminus 70 118 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tsu04g01483 182 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 68 150 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tsu04g01483 182 Gene3D - 61 153 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tsu04g01483 182 PANTHER DNA LIGASE 1 68 148 - -
Tsu04g01483 182 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 68 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01483 Tsu-Chr4 15255612 15256471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01483 61 148 Core DNA Replication Machinery Family AT1G08130 63.636 1.70e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01483 K10747 - gmx:100783155 113.62