Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01480 ATGACCATGGatgaacaacaacatcatcatcatcatagtaACTGGGAAACTTCtgaacttaataataataataatattaataataatcttaATCATCTTGTTGAATTTAATGATGTTCCTAAATTCAAATCTGTTCAACCACCTTCTCTTCCTCTTTCTCAATCTCAATCTTTTCATCTACCCTTTTCATCTACTTTCAGCCCATCTGATTTCTTGATCTCACCTTTCTTTCTTACTTCTCCAAATGTTTTTGCTTCTCCAACTACTGAGGCTTTTGCTAATCAGAGCTTTAACTGGAATAAGAATAGTTTAGGGGAAGAAGAGCAACAAGGTGATAAGAAAGATGAGAAAAACTACTCTGATTTCTCTTTTCCTACTCAAACAAAGCCTGATTCTGTTCTTCAATCTTCCTCAGATATCTTTCAACTGCAGGAACAAGCTAAGAAACAAAACATGTGGAAATTCAACGAACCTACAAAGCAAACCGGGTTTTTATCCGAAAGTACAGTATCGAAATCTGAATTCCAACCAACTCAGAACTTTTCCTCGGAAATGGCACTGGCGCTAATTAAACCAGAAACACATAGTAACTCAGTTGCTGGATCTGGTTATTATAActacaataacaataacaataacaataactaCAATAATGCATCGCAATCCGttagagaacaaaggaggtcAGAAGATGGGTACAACTGGAGAAAATATGGACAGAAGCAAGTGAAAGGAAGCGAAAATCCACGTAGTTATTACAAGTGCACGCATCTGAATTGCTCAATGAAGAAGAAAGTTGAGAAGGATTTGGATGGACAAATTACTGAAATTGTATATAAGGGAACTCATAATCACCCTAAGCCTCAGTCAAATAGAAGAACAAGCTCTCAACCAACTTCGTCTTGCACTAACTCCGGAATTTCTGATCAATCAGCGATGGATCATGTCTCCATACAAGAAGATTCTTCAGCGTCTGTTGGAGAGGAAGAGTTTGAGCAAACATCACAAACCAGTTATTCTGGTGGAGGAAATGATGACGCAAATGGACCGGAGGCCAAAAGATGGTAA 1068 0.3464 MTMDEQQHHHHHSNWETSELNNNNNINNNLNHLVEFNDVPKFKSVQPPSLPLSQSQSFHLPFSSTFSPSDFLISPFFLTSPNVFASPTTEAFANQSFNWNKNSLGEEEQQGDKKDEKNYSDFSFPTQTKPDSVLQSSSDIFQLQEQAKKQNMWKFNEPTKQTGFLSESTVSKSEFQPTQNFSSEMALALIKPETHSNSVAGSGYYNYNNNNNNNNYNNASQSVREQRRSEDGYNWRKYGQKQVKGSENPRSYYKCTHLNCSMKKKVEKDLDGQITEIVYKGTHNHPKPQSNRRTSSQPTSSCTNSGISDQSAMDHVSIQEDSSASVGEEEFEQTSQTSYSGGGNDDANGPEAKRW 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01480 355 MobiDBLite consensus disorder prediction 210 249 - -
Tsu04g01480 355 SMART WRKY_cls 229 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g01480 355 ProSiteProfiles WRKY domain profile. 224 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g01480 355 SUPERFAMILY WRKY DNA-binding domain 225 288 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g01480 355 MobiDBLite consensus disorder prediction 1 26 - -
Tsu04g01480 355 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 41 355 IPR044810 GO:0003700
Tsu04g01480 355 MobiDBLite consensus disorder prediction 280 355 - -
Tsu04g01480 355 MobiDBLite consensus disorder prediction 1 16 - -
Tsu04g01480 355 Gene3D WRKY domain 214 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g01480 355 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 41 355 - -
Tsu04g01480 355 MobiDBLite consensus disorder prediction 284 344 - -
Tsu04g01480 355 Pfam WRKY DNA -binding domain 230 286 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01480 Tsu-Chr4 15236492 15240088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01480 38 355 WRKY Transcription Factor Family AT2G38470 37.640 4.52e-41 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu04g01480 WRKY 7.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01480 K13424 - gmx:100792833 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01480 04 15236492 15240088 Tsu04g01480 04 15236492 15240088 ECH
Tsu04g01480 04 15236492 15240088 Tsu06g00313 06 2548408 2551946 PCT