Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01462 ATGGCAGTTACATTGTATAACCTTAAATCTGAATCTGGTTTGAAGAAACTTAATGAGTATTTGCTTACACGCAGTTACATCACTGGTTACCAAGCTTCAAAGGATGATGTCACTGTCTATTCAGCTTTGTCATCAGTTCCATCAGTTGAATTTGTTAATGTTGCTAGGTGGTACAAACACATTGATGCTTTGTTGAGAATTTCCGGTGTTTTTGGTGAGGGATCTGGTGTCACCGTGGAATCTTCTCTTGTTGCTGAAGAGGCTATTGCGACTCCTCCAGTTGCTGACACAAAGGCCACTGAAGcagaggatgatgatgatgacgacgatGTTGATTTGTTTGGTGAAGAGACTGAGGAAGAGAAGAAGGCAGCTGAGGAACGGGCAGCAGCCGTGAAGGCATCCGGCAAAAAGAAAGAGAGTGGAAAATCATCTGTTCTGTTGGATGTGAAGCCATGGGATGATGAAACCGACATGAAAAAGCTTGAAGAAGCGGTGAGATCTGTTCAGTTAGAAGGGTTGTTTTGGGGTGCATCCAAACTCGTTCCTGTTGGGTACGGTATCAAGAAACTTCAAATTATGCTTACTATTGTCGATGATTTGGTTTCTGTTGACAATATGGTTGAGGATTATCTTACCGTTGAGCCCATCAATGAGTATGTTCAGAGTTGTGACATCGTAGCCTTCAATAAAATATAA 699 0.4034 MAVTLYNLKSESGLKKLNEYLLTRSYITGYQASKDDVTVYSALSSVPSVEFVNVARWYKHIDALLRISGVFGEGSGVTVESSLVAEEAIATPPVADTKATEAEDDDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQLEGLFWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNMVEDYLTVEPINEYVQSCDIVAFNKI 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01462 232 MobiDBLite consensus disorder prediction 93 112 - -
Tsu04g01462 232 SMART EF1_GNE_2 143 232 IPR014038 GO:0003746|GO:0006414
Tsu04g01462 232 Pfam EF-1 guanine nucleotide exchange domain 145 232 IPR014038 GO:0003746|GO:0006414
Tsu04g01462 232 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 221 232 IPR001326 GO:0003746|GO:0005853|GO:0006414
Tsu04g01462 232 PANTHER RIPENING REGULATED PROTEIN DDTFR10-LIKE 1 232 - -
Tsu04g01462 232 CDD EF1B 141 232 IPR014038 GO:0003746|GO:0006414
Tsu04g01462 232 SUPERFAMILY GST C-terminal domain-like 8 69 IPR036282 -
Tsu04g01462 232 Coils Coil 115 135 - -
Tsu04g01462 232 Gene3D - 136 232 IPR014717 -
Tsu04g01462 232 MobiDBLite consensus disorder prediction 117 137 - -
Tsu04g01462 232 Gene3D - 2 74 - -
Tsu04g01462 232 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 107 115 IPR001326 GO:0003746|GO:0005853|GO:0006414
Tsu04g01462 232 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 232 - -
Tsu04g01462 232 SUPERFAMILY eEF-1beta-like 140 232 IPR036219 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01462 Tsu-Chr4 15121736 15124067 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01462 7 232 Eukaryotic Initiation Factors Gene Family AT2G18110 80.617 3.10e-114 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01462 K03232 - nnu:104610217 330.487