Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01450 ATGGGCAAGAAACAGAAGTCGCAGCAGATTCTTCTTCCGCCGGACCTCCCACCGGAGATTCCTGACGATGAAGTTGAGTTTTCCGACGACGACATTAAATTCGTCAACGAAAATCGCGCCTATGCTTCTTTGCTTTCCAATTTGGACACTCAATCAATCACCAAGCATGTTACACGGGTTGCTGATGCCAAAGAAGATACTTTGGAGAAACTATATGAGCAACGCAGGCAAAAGACTGCtctcaagaaagaaaaagaagaaacagGTTTGCAGGTTGATCGAGTAGATGCTCTTCCAGTCAAGACATTAGATGGAAAAGTCTATTATCGGACAGCTACGAAGACGGCACCAGTAAATGCTCCAAGTGAAGAGGAAACTGGAGAGGATGGCAATGAAGACATGGGTTTAGTGAAGCTAACTAAGGCTGAAAAGAGAGCCAAACTtaagaaaattagaaaagaaggaaaaaaacaagGGAAAGAGGTGGCTAAAGAGGAAGGAGAAGAAGCACCACAGGCAGCAGTTTTGGCTGAGGTTAAAGAAGATCTTAAAGTTGAAGAGGATTTTGAAAGTAAAAAGTGTAAACTTGCAGAGTTCGGAAATGCCTTGCTAACAGACCCAGAGTCCAATATTAAATTTCTGAAGGAAATGGTACAGATATCTAAAGATAATGATGACACCATTGTTAAACTTGGACTTCTATCCCTCTTGGCTGTTTTCAGAGATATTATACCTGGCTATCGAATCAGGCTTCCTACTGAAAAGGAACAAGAAATGAAGGTTTCAAAGACCGTTAAAAAGATGCGTTTTTATGAATCAACTCTCCTCTCTGCATACAAGGCTTACTTGCAAAGGCTGATAGCCTTGGAAAAGAAGCCTTTATTTCAGCTTGTCGCAGTTCGTTGTATTTGTTCTTTGCTTGATTCAAATCCCCATTTCAACTTTCGTGAAACCTTGTTGGATGCAACTATCAGAAACATAAGCTCCAGTAATGAGGCCATAAGGCAACTTTGCTGTTCCACAATTAAGTCACTCTTTACAAATGAGGGTAAACATGGTGGTGAAGCTACTGTGGAGGCTGTGCGGTTGATTTCTTATAAGGTTAAAGATCATAATTGCCAGTTGCACCCTGATTCCATTGAGGTGTTCTTGTCTCTTTCATTTGATGAGGATCTTGCAAAGGCTGCAAGGATGGATAAGGATCAGAAATTTAAAAACAAGAAAggtaagaaaagaaaaaacacggAGGCATCAAATCAGTTGCCGGAAAATGACAGAAAGAGAAGTAGGCAAGAGTCGATTTCTAAGACAAGAGAGGAGGTTGAAGCTGAGTACAAGGCTGCTTCCTTTACCAAGGATGCTATGGAGAAGAGACAGATGCAAACACAAACACTCTCTGCTGTGTTTGAGACATACTTTCGCATTTTGAAACATACAATGCAGTCCATAGTTGCCAGGCCTGAAGAAAACCCTGGGGTAGTTTCAGCTGCAGTTGGAGTGGAACCCCACCCATTGCTGGATCCATGTCTGAAGGGACTGGCAAAATTTTCGCACCTGATTGACCTTGATTTCTTGGGTGATCTAATGAACCATTTGAAAATACTTGCTTCTGGAGGTAGCAAATCAGGCAACACATCTGAGAATTTTACTAAATGTCTGACCGTATCTGAACGCCTCCAATGTTGCATCGTTGCTTTTAAAGTGATGCGAACCAATCTTGATGCCTTGAATGTTGATTTGCAAGACTTCACTGTCCATCTTTACAATCTTGTACTTGAATACAGGCCTGGAAGGGATCAAGGAGAGGTGTTAGCAGAAGCTTTGAAGATCATGTTGTGTGACGATAGGCAGCATGACATGCAAAAAGCTGCTGCGTTTATAAAACGTTTGGCTACGTTGTCACTGTGTGTTGGATCTGCAGATTCCATGGCTGCCTTGGTCACTGTAAAGCATCTCCTTCTGAAGAATGTCAAGTGCAGAAATCTGTTGGAAAATGACACTGGAGGGGGCTCTGTTTCTGGCACAATTCCGAAATATCTACCATATTCGACAGATCCTAATTTAAGCGGCGCCCTTGCCTCAGTGCTTTGGGAACTTTGTCTTTTGTCCAAACACTATCATCCAACCATATCAGCAATGGCAACAGGCATTTCAAGCATGAGCACTGAAAACCAAGTCTTTCTCTCCAAGTCCTCTCCTCAACAAGCTTTCAAGGACATGTCTATTGACCAAGAACTATGTTTTGAACAAAGTGGCAGtattaaattaaacaacaaGAAGAGACGATTGAATGGCAATGCTACATCCAATTCCATCGGTTCCACAACAGTAACGAGTTCATTCAATGAAGATGACTTGCGAAAGAAATTTAGTTCCCATTTTATGGTTCTTCATGATATCAAGGAGAACGAAAGGTTGAGAAGTAAGTTGGATAAGACTGCAAAATCACTTCAGCTATTTGAacaatataagaaacaaaagaagaaacGATCAAAACCTAGTAGTTGA 2508 0.4003 MGKKQKSQQILLPPDLPPEIPDDEVEFSDDDIKFVNENRAYASLLSNLDTQSITKHVTRVADAKEDTLEKLYEQRRQKTALKKEKEETGLQVDRVDALPVKTLDGKVYYRTATKTAPVNAPSEEETGEDGNEDMGLVKLTKAEKRAKLKKIRKEGKKQGKEVAKEEGEEAPQAAVLAEVKEDLKVEEDFESKKCKLAEFGNALLTDPESNIKFLKEMVQISKDNDDTIVKLGLLSLLAVFRDIIPGYRIRLPTEKEQEMKVSKTVKKMRFYESTLLSAYKAYLQRLIALEKKPLFQLVAVRCICSLLDSNPHFNFRETLLDATIRNISSSNEAIRQLCCSTIKSLFTNEGKHGGEATVEAVRLISYKVKDHNCQLHPDSIEVFLSLSFDEDLAKAARMDKDQKFKNKKGKKRKNTEASNQLPENDRKRSRQESISKTREEVEAEYKAASFTKDAMEKRQMQTQTLSAVFETYFRILKHTMQSIVARPEENPGVVSAAVGVEPHPLLDPCLKGLAKFSHLIDLDFLGDLMNHLKILASGGSKSGNTSENFTKCLTVSERLQCCIVAFKVMRTNLDALNVDLQDFTVHLYNLVLEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFIKRLATLSLCVGSADSMAALVTVKHLLLKNVKCRNLLENDTGGGSVSGTIPKYLPYSTDPNLSGALASVLWELCLLSKHYHPTISAMATGISSMSTENQVFLSKSSPQQAFKDMSIDQELCFEQSGSIKLNNKKRRLNGNATSNSIGSTTVTSSFNEDDLRKKFSSHFMVLHDIKENERLRSKLDKTAKSLQLFEQYKKQKKKRSKPSS 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01450 835 MobiDBLite consensus disorder prediction 399 438 - -
Tsu04g01450 835 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 3 775 IPR016903 -
Tsu04g01450 835 MobiDBLite consensus disorder prediction 1 20 - -
Tsu04g01450 835 MobiDBLite consensus disorder prediction 413 438 - -
Tsu04g01450 835 SUPERFAMILY ARM repeat 200 390 IPR016024 -
Tsu04g01450 835 Coils Coil 438 458 - -
Tsu04g01450 835 Coils Coil 68 88 - -
Tsu04g01450 835 SUPERFAMILY ARM repeat 182 710 IPR016024 -
Tsu04g01450 835 Pfam CBF/Mak21 family 559 714 IPR005612 -
Tsu04g01450 835 PIRSF Noc3 1 814 IPR016903 -
Tsu04g01450 835 Pfam Nucleolar complex-associated protein 192 282 IPR011501 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01450 1 810 Core DNA Replication Machinery Family AT1G79150 57.178 0.0 888
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01450 K14834 - gmx:100776136 1238.02