Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01424 ATGGTAGACCATGTTAATGACTATGATGCATATGGCATCATCATGGATGATGGCCATGTTGACTGTGGTTCATATGGAATCATCATGGATGACCATGTTGATGCTTATGAATTCAATACTTTATTAAGCACTTCAGAGAGTAGTACTATCTCTGAAGTCAATTCCATATTCACCAATGATCATAgccaatttttttcaattgatGAATCAGAAACCTTGGAACTTCCATCTCTAATGGAATTGGATGCTTTTGATTCAATTTTGTGTTCCCAAATTGTTGATATTCGTGATCACGGATACCAAGAAGAAAGTGAAGGGAGTTTCCCTTCACAAAATTTTCCTCGTGACTTCCAggaacaaaattcaaatttcctCGAATACAGTTTTGAAATGACTACCAATGACACTTTAATTAAAGATAATTTCCTTTCAAGCGATTTTCCCTGTGATCCATGGAGTCCAACACAGTCATTGAAATCGGATTTTTCATCAATTCAACAATCACTAATTTTTCCAAAAGAAAACATGGAAATTGAAAACAAAGTGAGTCTTCCACACTTGATGGAAGCACATGGAGAAGCCTTGGAGAAAGAACAAAAAGCACtagcaaaatcaattttgaagtGCATAAGCCAAAAAGTTACTACTCCAATTGGTGATTCTCTTGGGAGACTTGCATTTTATTTGTCTCAAGAAATGACAAATCATGGAGATTATCTCAAAGGAGAAGCTCACAAGAATTTTGATGCATCTTTCAAGGCACTCTATCAAGGAAATTTAGTTGGAAAAGTTGCTCATTTTGCAGCTATTTCAGCAATTCTTGAGGCTGCTATGTTAGAAGATTGTGATGAAATTcacataattgatttttgtaTTGGAAATGGTGTTCAATGGCCTTTTTTGTTGGAGGCTGTTTCAAAAATGAACAAAAGATTGAAATTGACATCAATTAAATCGAGTGACGAAGAAAATTCTGAATGTGTTTGGAATTTTGAGGATACCAAAAGGGAACTTTATGGATATGCTAAATCATGTGGTTTGAAATTGAAGGTAGAGGAAAAAGAATTGGAAGAATTGGTTAGTGAGATCAAAATAATGAACAAAAAGGATGGAAAGAAAGTGTTTTTGGCTTTTAATTTGATGATTGGTCTTCCTCATATGGGAATGGTAAGAAACTTAAGAAAAAGTGCTTTTGAGTTTTTGAAGGTAGCTGaggatttgattaaaaattatgGTGGAAAGGGAATGATTACTTTTGGAGATGGTGATGCATTTGAGAaactaaaaaatagtttaaattttaagtcattttttgaAGGGAATTTGGTTCATTATAAGGCTTTGTTGGAATCAATTGAATCACAATTTTCAGCTGAATTCTTAGAAGCAAGAATTGCATGTGAGGTGTTGTTTGTGGCACCTTGTATATCTTCTCTTGATTGGTTACAAACATGGGAAGAAATGAAAAGTGATGGTTATCTTAAATGTGATATTAGCTTAGAAGATGGAACATTGAGCAAAAATGTTTTGATGGAGGTGAAAGAAGTGTTGAGAGGGTGTGAAAGTTCATATCAAGCAAAAATTGAAGGAGAAAATGGGAATGAAATTGTTTTGGAATGGAAAGGAACACAATTATTAAGATTTTCCATTtggaaaaactaa 1662 0.3177 MVDHVNDYDAYGIIMDDGHVDCGSYGIIMDDHVDAYEFNTLLSTSESSTISEVNSIFTNDHSQFFSIDESETLELPSLMELDAFDSILCSQIVDIRDHGYQEESEGSFPSQNFPRDFQEQNSNFLEYSFEMTTNDTLIKDNFLSSDFPCDPWSPTQSLKSDFSSIQQSLIFPKENMEIENKVSLPHLMEAHGEALEKEQKALAKSILKCISQKVTTPIGDSLGRLAFYLSQEMTNHGDYLKGEAHKNFDASFKALYQGNLVGKVAHFAAISAILEAAMLEDCDEIHIIDFCIGNGVQWPFLLEAVSKMNKRLKLTSIKSSDEENSECVWNFEDTKRELYGYAKSCGLKLKVEEKELEELVSEIKIMNKKDGKKVFLAFNLMIGLPHMGMVRNLRKSAFEFLKVAEDLIKNYGGKGMITFGDGDAFEKLKNSLNFKSFFEGNLVHYKALLESIESQFSAEFLEARIACEVLFVAPCISSLDWLQTWEEMKSDGYLKCDISLEDGTLSKNVLMEVKEVLRGCESSYQAKIEGENGNEIVLEWKGTQLLRFSIWKN 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01424 553 Pfam GRAS domain family 190 552 IPR005202 -
Tsu04g01424 553 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 12 552 IPR005202 -
Tsu04g01424 553 Coils Coil 349 369 - -
Tsu04g01424 553 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 12 552 - -
Tsu04g01424 553 ProSiteProfiles GRAS family profile. 175 552 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01424 Tsu-Chr4 14669134 14670795 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01424 203 552 GRAS Transcription Factor Family AT5G66770 25.000 2.22e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu04g01424 GRAS 1.3e-28 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01424 - - mtr:MTR_7g069740 799.66