Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01423 atgGTACATCTTGGTCACTATGATCCATATGACATCATCATGGATGGCCATGTTGATGACTATGGTTCATATGGCATCATCATGGATGACCATGTTGATGATTATGAATTCAATACTCTACTAAGCACTTCAGTGAATAGTACTGCCTCAGAAATCTCCATGTTCACCAATGATCATATCCAATTTCCAATTGATGAATCTGAAACCTTGGAACTTTCATCATTTATGGAATTGGAATATTTTGATTCAATTTCATGTCCCCAAATTGTTGATCTTCACCAATATGAATACCGAGAAGAAAGTGAAGGGAGCTTCCCTTCACAAAATTTTCCGTGTAACCTCGAGGAACAAAGTTCAAATCTCATCAGAGACAGTTGCGAAATGAACATCGGTACTACTTTGACTAATGATAATTTCGCGTCACAAAATTTCCAATATGATTCATGGAGTCCAACACAATCAATGAAATCAGATTTTTCCTCCTCAATTCAACAATCACTTGTTCTTCCACAAGAAAACatggaaattgaaaatcaagtgAGTCTTCCACACTTGATGGAAGCACATGGAGAAGCCTTGGAGAAAGGACAAAAAGCACTAGCAGAAGTTAATTTGAAGTGTATAAGCCAAAAAGTTACTCCAATGGGTGATTCTCTTGAGACACTTGCATTTTATTTGTCTCAAGAAGTTACAAATCATGGCGAATATCTCAAAGGCGAGGCTCAAAAAAACTTTGATTCTTCTTTCAATGCACTCTATCAAGGAAATTTAGTTGGAAAAGTTGCTCATTTTGCAGCTATTTCAGCAATTCTTGAGGCTGCTATGTTAGAAGATTGTGATGAAATTcacataattgatttttgtaTTGGAAATGGTGTTCAATGGCCTTCTTTATTGGAGGCTGTTTCAAAAATGAACAAAAGATTGAAATTGACATCAATTAAATCGAGTGACgatgaaaattctgatcaatgtGTTTGGAATTTTGATGATACTAAAAGGGAACTATGTGAGTATGCTAAATCATGTGGTTTGAAATTGATGGTAGAGGAAAAGGGATTGGAAGAAATTGTTAGTGAGATCAAAATTACGAACAAAACGGTTGCGAGGAAAGTGTTTTTAGCCTTTAATTTGATGATTGGTCTTCCTCATATGGGAATGCTaagaaacagaagaaaaaatGCTTTGGAATTTTTGAAAGTAGCTGAGGATTTGATCAAGAATTGTGGAAGCAAGGGAATgattacttttggtgatggtgATGTATTTGACAAACTGAAAAACAGTTTAAATTTTAAGTCATTTTATGAAGGGAATTTGGTGCATTATAAGGCCTTATTAGAATCAATTGAATCACAATTTTCAGAAAAATTCTCAAAAGCAAGAATTGCATGTGAAGTGCTTTTTATTGCACCTTGTATATCTTCTTGTGATTGGTTACAAACATGGGAAGAGATGAAAAGTGATGGTGATTTTCAAGCTGAGATAAGCTTAGAAGGTGGAAGTTTGAGCAAAAATGTTTTGATGGAAGTCAAAGAAGTGTTGAGAGGGTGTGAAAGTTCTTATCAAGCTAGAATTGAAGGAGGAAATGAGAATGAACTTGTTTtggaatggaatggaacacAATTATTAAGATTTTCCATTtggaaaaactaa 1656 0.3225 MVHLGHYDPYDIIMDGHVDDYGSYGIIMDDHVDDYEFNTLLSTSVNSTASEISMFTNDHIQFPIDESETLELSSFMELEYFDSISCPQIVDLHQYEYREESEGSFPSQNFPCNLEEQSSNLIRDSCEMNIGTTLTNDNFASQNFQYDSWSPTQSMKSDFSSSIQQSLVLPQENMEIENQVSLPHLMEAHGEALEKGQKALAEVNLKCISQKVTPMGDSLETLAFYLSQEVTNHGEYLKGEAQKNFDSSFNALYQGNLVGKVAHFAAISAILEAAMLEDCDEIHIIDFCIGNGVQWPSLLEAVSKMNKRLKLTSIKSSDDENSDQCVWNFDDTKRELCEYAKSCGLKLMVEEKGLEEIVSEIKITNKTVARKVFLAFNLMIGLPHMGMLRNRRKNALEFLKVAEDLIKNCGSKGMITFGDGDVFDKLKNSLNFKSFYEGNLVHYKALLESIESQFSEKFSKARIACEVLFIAPCISSCDWLQTWEEMKSDGDFQAEISLEGGSLSKNVLMEVKEVLRGCESSYQARIEGGNENELVLEWNGTQLLRFSIWKN 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01423 551 ProSiteProfiles GRAS family profile. 173 550 IPR005202 -
Tsu04g01423 551 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 9 550 IPR005202 -
Tsu04g01423 551 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 9 550 - -
Tsu04g01423 551 Pfam GRAS domain family 188 550 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01423 Tsu-Chr4 14652522 14654177 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01423 201 550 GRAS Transcription Factor Family AT5G66770 23.670 2.87e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu04g01423 GRAS 5.7e-28 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01423 - - mtr:MTR_7g069740 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01423 04 14652522 14654177 Tsu04g01423 04 14652522 14654177 ECH