Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01420 ATGGATATGAAGGAAGAAACATGTGGCTCAATATGTTCAAAGACAAGTGTTTCAATGAATGAAAATGGTTGTGAAATTAGTGAAGcaaatgaagatgaagaaagtaAGCAAAACAACAATGGAGGAATAAGCTCAAGCAATAGTACTATTGAAGAGAATTCTGAGAAGAAACCATCAGTGAGGCCATATGTTAGATCCAAGTTTCCTAGGCTACGTTGGACTCCCGATCTTCATTTTCGATTTCTTCATGCTGTTCAAAGACTTGGTGGACAAGAGAGAGCAACTCCAAAATTGGTCCTTCAATTGATGAATATAAAAGGTTTGAGTATTGCTCATGTGAAGAGTCATTTGCAgATGTATAGAAGCAAGAAAGTAGTTGACACAAATCAAGTGTTGGGTGATCATAGGCTTCTTGTAGACAATGGAGACAAAAATGTTTATAATCTCACCCAACTTCCTATGCTTCAAGGCTATACTCAAAACCAAACTTCATCAAATAgatACAGATATGAAGATGCTTCTATTGCCATGTATGAAAACATGGTGCATATGAGTTCAATAAATGAATCTAGAGCTGATTTCTATGGAAGAATGATTGAGAGaaccaataataataacatcaaTATGCAAGCTCATAATATTTTCCAAGTGGATTCTACCAATTTTAGAGAATTATCAACAAGTAAAGTGCAAGAACCAAATGATAATTTCCTCTCATTTTGTGGCAATGAATCTTTTAGATTGAGCCAAAAGGATGATCTTCAAATGCAGCCTAGAGAACAAGAGCTTATGCAAAATGATAATCAAGTGGACTTGAAGacattgaaaagaaaagcttCAGATTTGGACCTTGATTTGGATCTATcacttaaattaaattcaagggTCATTGGTGATCACAAGAACCAAGGAATTATAGAGGATCATCATGAAGTTGGAAGCAATTTATCTCTTTCATTGTTTTCTCAATCCTCTTATAATCTTtgcaaaagaaataaagaaggACAAGATGATTCTAAGGAGCAAGAGAAAAGAGTCAATATAGGTTTGGATCTAACCATATGA 1065 0.3174 MDMKEETCGSICSKTSVSMNENGCEISEANEDEESKQNNNGGISSSNSTIEENSEKKPSVRPYVRSKFPRLRWTPDLHFRFLHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVVDTNQVLGDHRLLVDNGDKNVYNLTQLPMLQGYTQNQTSSNRYRYEDASIAMYENMVHMSSINESRADFYGRMIERTNNNNINMQAHNIFQVDSTNFRELSTSKVQEPNDNFLSFCGNESFRLSQKDDLQMQPREQELMQNDNQVDLKTLKRKASDLDLDLDLSLKLNSRVIGDHKNQGIIEDHHEVGSNLSLSLFSQSSYNLCKRNKEGQDDSKEQEKRVNIGLDLTI 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01420 354 PANTHER - 9 354 - -
Tsu04g01420 354 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 9 354 IPR044848 GO:0003700
Tsu04g01420 354 MobiDBLite consensus disorder prediction 36 53 - -
Tsu04g01420 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 125 IPR017930 -
Tsu04g01420 354 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 69 124 IPR006447 GO:0003677
Tsu04g01420 354 SUPERFAMILY Homeodomain-like 69 123 IPR009057 -
Tsu04g01420 354 MobiDBLite consensus disorder prediction 23 61 - -
Tsu04g01420 354 Gene3D - 69 125 - -
Tsu04g01420 354 Pfam Myb-like DNA-binding domain 71 121 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01420 Tsu-Chr4 14610642 14612562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01420 60 125 G2-like Transcription Factor Family AT2G42660 78.788 5.66e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu04g01420 Myb_DNA-binding 3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01420 - - gmx:102662997 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01420 04 14610642 14612562 Tsu04g01420 04 14610642 14612562 ECH