Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01417 ATGGCAGCATCACCAGCATACCAAACACATCTTCCAACATCACCAGAATGGTTAAACAAAGGAGACAACGCATGGCAAATGACAGCAGCAACACTTGTTGGATTACAAAGCATGCCAGGATTAGTAATTCTCTATGCAAGcatagtgaaaaaaaaatgggCAGTAAATTCAGCTTTCATGGCACTTTATGCTTTTGCAGCAGTTTTAATCTGTTGGGTTCTTGTTGCTTATAGAATGGCATTTGGTGATCAACTTTTACCCTTTTGGGGTAAAGGAGCACCAGCTTTAGGGCAAAAATTTCTTATTGGAAGAGCAAAAGTACCTGAAAGTACTCATTATTTCAAGAATAGTAAAATTGTTGAAACACCAATGGAAGAACCTTTTTTTCCTATGGCTTCACTTGTTTATTTTCAGTTTACTTTTGCTGCTATTACTATGATTTTGTTGGCTGGTTCTGTTCTTGGAAGAATGAATATTAAAGCTTGGATGGCTTTTGTTCCTCTTTGgcttattttttcttatactgTTGGTGCTTTTAGTCTTTGGGGTGGTGGATTTCTTTATCATTGGGGTGTTATTGATTACTCTGGTGGCTATGTTATTCATCTCTCTTCTGGAATTGCTGGTTTCACTGCTGCTTATTGGGTTGGACCAAGGATAAAGAGTGATAGGGAAAGGTTTCCACCAAACAATGTGTTGCTGATGCTTGCAGGTTCTGGATTGCTATGGATGGGTTGGTCAGGTTTCAATGGTGGAGCACCATATGCAGCAAATGTTGCATCTTCAATTGCTGTGTTGAACACTAATATTTGTGCAGCAACTAGTCTCTTAGTGTGGACTACTCTTGATGTCATTTTCTTTGGGAAACCTTCTGTGATTGGAGCTGTTCAGGGTATGATGACTGGACTTGTTTGCATCACACCAGGAGCAGGGCTTGTGCAATCGTGGGCGGCTATTGTGATGGGAATTTCATCTGGCAGCATTCCATGGGTGACCATGATGATCTTACATAAGAAGTCAAGTCTTCTACAAAAGGTTGATGACACTCTTGGTGTGTTTCACACTCATGCTGTGGCTGGCCTATTGGGTGGCCTCCTTACCGGACTTTTCGCCGAGCCAGCCCTATGTAGACTACTATTGCCTGTGACCAATTCAAGGGGTGCATTCTATGGTGGAAGTGGTGGTGTACAATTTATAAAGCAATTAGTGGCAGCATTGTTTGTTATTGGATGGAACATAGTCTCCACCACAATCATTCTCCTTGTTATACAAATTTTCATACCCTTAAGAATGCCCGACGAGCAGCTCGAAATCGGAGACGATGCGGCTCATGGTGAAGAAGCTTATGCTCTTTGGGGTGATGGAGAAAAATATGATCCAACTAGACATGGATCATTAAATACTGGTACCACTGGAGTATCACCTTATGTTAATGGTGCAAGAGGtgttactattaatttatgA 1464 0.4016 MAASPAYQTHLPTSPEWLNKGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVAYRMAFGDQLLPFWGKGAPALGQKFLIGRAKVPESTHYFKNSKIVETPMEEPFFPMASLVYFQFTFAAITMILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRIKSDRERFPPNNVLLMLAGSGLLWMGWSGFNGGAPYAANVASSIAVLNTNICAATSLLVWTTLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGISSGSIPWVTMMILHKKSSLLQKVDDTLGVFHTHAVAGLLGGLLTGLFAEPALCRLLLPVTNSRGAFYGGSGGVQFIKQLVAALFVIGWNIVSTTIILLVIQIFIPLRMPDEQLEIGDDAAHGEEAYALWGDGEKYDPTRHGSLNTGTTGVSPYVNGARGVTINL 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01417 487 PANTHER AMMONIUM TRANSPORTER 1 484 - -
Tsu04g01417 487 ProSitePatterns Ammonium transporters signature. 194 219 IPR018047 GO:0008519|GO:0016020|GO:0072488
Tsu04g01417 487 SUPERFAMILY Ammonium transporter 17 431 - -
Tsu04g01417 487 TIGRFAM amt: ammonium transporter 22 449 IPR001905 GO:0008519|GO:0016020|GO:0072488
Tsu04g01417 487 Pfam Ammonium Transporter Family 24 449 IPR024041 GO:0008519|GO:0016020|GO:0072488
Tsu04g01417 487 Gene3D Ammonium transporter AmtB like domains 3 452 IPR029020 -
Tsu04g01417 487 PANTHER AMMONIUM TRANSPORTER MEP2 1 484 IPR001905 GO:0008519|GO:0016020|GO:0072488
Tsu04g01417 487 PRINTS Rhesus blood group protein signature 138 154 IPR002229 GO:0005887
Tsu04g01417 487 PRINTS Rhesus blood group protein signature 233 251 IPR002229 GO:0005887
Tsu04g01417 487 PRINTS Rhesus blood group protein signature 264 286 IPR002229 GO:0005887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01417 Tsu-Chr4 14585488 14591331 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01417 131 487 Inorganic Solute Cotransporters AT2G38290 77.994 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01417 K03320 - gmx:100790119 887.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01417 04 14585488 14591331 Tsu04g01417 04 14585488 14591331 ECH