LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g01417	ATGGCAGCATCACCAGCATACCAAACACATCTTCCAACATCACCAGAATGGTTAAACAAAGGAGACAACGCATGGCAAATGACAGCAGCAACACTTGTTGGATTACAAAGCATGCCAGGATTAGTAATTCTCTATGCAAGcatagtgaaaaaaaaatgggCAGTAAATTCAGCTTTCATGGCACTTTATGCTTTTGCAGCAGTTTTAATCTGTTGGGTTCTTGTTGCTTATAGAATGGCATTTGGTGATCAACTTTTACCCTTTTGGGGTAAAGGAGCACCAGCTTTAGGGCAAAAATTTCTTATTGGAAGAGCAAAAGTACCTGAAAGTACTCATTATTTCAAGAATAGTAAAATTGTTGAAACACCAATGGAAGAACCTTTTTTTCCTATGGCTTCACTTGTTTATTTTCAGTTTACTTTTGCTGCTATTACTATGATTTTGTTGGCTGGTTCTGTTCTTGGAAGAATGAATATTAAAGCTTGGATGGCTTTTGTTCCTCTTTGgcttattttttcttatactgTTGGTGCTTTTAGTCTTTGGGGTGGTGGATTTCTTTATCATTGGGGTGTTATTGATTACTCTGGTGGCTATGTTATTCATCTCTCTTCTGGAATTGCTGGTTTCACTGCTGCTTATTGGGTTGGACCAAGGATAAAGAGTGATAGGGAAAGGTTTCCACCAAACAATGTGTTGCTGATGCTTGCAGGTTCTGGATTGCTATGGATGGGTTGGTCAGGTTTCAATGGTGGAGCACCATATGCAGCAAATGTTGCATCTTCAATTGCTGTGTTGAACACTAATATTTGTGCAGCAACTAGTCTCTTAGTGTGGACTACTCTTGATGTCATTTTCTTTGGGAAACCTTCTGTGATTGGAGCTGTTCAGGGTATGATGACTGGACTTGTTTGCATCACACCAGGAGCAGGGCTTGTGCAATCGTGGGCGGCTATTGTGATGGGAATTTCATCTGGCAGCATTCCATGGGTGACCATGATGATCTTACATAAGAAGTCAAGTCTTCTACAAAAGGTTGATGACACTCTTGGTGTGTTTCACACTCATGCTGTGGCTGGCCTATTGGGTGGCCTCCTTACCGGACTTTTCGCCGAGCCAGCCCTATGTAGACTACTATTGCCTGTGACCAATTCAAGGGGTGCATTCTATGGTGGAAGTGGTGGTGTACAATTTATAAAGCAATTAGTGGCAGCATTGTTTGTTATTGGATGGAACATAGTCTCCACCACAATCATTCTCCTTGTTATACAAATTTTCATACCCTTAAGAATGCCCGACGAGCAGCTCGAAATCGGAGACGATGCGGCTCATGGTGAAGAAGCTTATGCTCTTTGGGGTGATGGAGAAAAATATGATCCAACTAGACATGGATCATTAAATACTGGTACCACTGGAGTATCACCTTATGTTAATGGTGCAAGAGGtgttactattaatttatgA	1464	0.4016	MAASPAYQTHLPTSPEWLNKGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVAYRMAFGDQLLPFWGKGAPALGQKFLIGRAKVPESTHYFKNSKIVETPMEEPFFPMASLVYFQFTFAAITMILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRIKSDRERFPPNNVLLMLAGSGLLWMGWSGFNGGAPYAANVASSIAVLNTNICAATSLLVWTTLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGISSGSIPWVTMMILHKKSSLLQKVDDTLGVFHTHAVAGLLGGLLTGLFAEPALCRLLLPVTNSRGAFYGGSGGVQFIKQLVAALFVIGWNIVSTTIILLVIQIFIPLRMPDEQLEIGDDAAHGEEAYALWGDGEKYDPTRHGSLNTGTTGVSPYVNGARGVTINL	487

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tsu04g01417	487	PANTHER	AMMONIUM TRANSPORTER	1	484	-	-
Tsu04g01417	487	ProSitePatterns	Ammonium transporters signature.	194	219	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
Tsu04g01417	487	SUPERFAMILY	Ammonium transporter	17	431	-	-
Tsu04g01417	487	TIGRFAM	amt: ammonium transporter	22	449	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
Tsu04g01417	487	Pfam	Ammonium Transporter Family	24	449	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
Tsu04g01417	487	Gene3D	Ammonium transporter AmtB like domains	3	452	IPR029020	-
Tsu04g01417	487	PANTHER	AMMONIUM TRANSPORTER MEP2	1	484	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
Tsu04g01417	487	PRINTS	Rhesus blood group protein signature	138	154	IPR002229	GO:0005887
Tsu04g01417	487	PRINTS	Rhesus blood group protein signature	233	251	IPR002229	GO:0005887
Tsu04g01417	487	PRINTS	Rhesus blood group protein signature	264	286	IPR002229	GO:0005887

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g01417	Tsu-Chr4	14585488	14591331	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu04g01417	131	487	Inorganic Solute Cotransporters	AT2G38290	77.994	0.0	553

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g01417	K03320		-	gmx:100790119	887.1

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu04g01417	04	14585488	14591331	Tsu04g01417	04	14585488	14591331	ECH

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