Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01415 ATGGATTGCTACAACAACACTTTCTCTTATTCTTCAGGGTCATCTTcaaaaacaaatgagaaaaagggtgtgaaaaaaaccaaaaccaaaagaCCATCAATGAAACTTTCAACTGATCCACAAAGTATTGCAGCTAGAGAAAGAAGGCATAGAATCAGTGACAGGTTTAAGATTCTTCAAAGTATGGTTCCTGGTGGGAATAAATTGGATACTGTTTCTATGTTAGAAGAAGCTATTCATTATGTTAAGTTTCTTAAGACACAGATTATGCTTCATCAAACAGTGATTAACTTTGTTGATGATATTGATGAGTCATCATCACATATGTTGCTTCCTCAAGATAATTATTATTCTCCAAATGATAACATCATTCAGCAAAACAATTCTGGTTCAGTTGAGTCTATGCAGAATTTTCCACAGTTACCACTAGATCAGTTCTGTTTTCAAGGTGATCAAGATACCAAAACCATGTTTAATGTCactatgaaatattaa 495 0.299 MDCYNNTFSYSSGSSSKTNEKKGVKKTKTKRPSMKLSTDPQSIAARERRHRISDRFKILQSMVPGGNKLDTVSMLEEAIHYVKFLKTQIMLHQTVINFVDDIDESSSHMLLPQDNYYSPNDNIIQQNNSGSVESMQNFPQLPLDQFCFQGDQDTKTMFNVTMKY 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01415 164 MobiDBLite consensus disorder prediction 1 46 - -
Tsu04g01415 164 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 16 154 - -
Tsu04g01415 164 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 85 IPR011598 GO:0046983
Tsu04g01415 164 Gene3D - 33 95 IPR036638 GO:0046983
Tsu04g01415 164 SMART finulus 42 91 IPR011598 GO:0046983
Tsu04g01415 164 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 16 154 IPR045843 GO:0003700|GO:0006355
Tsu04g01415 164 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 94 IPR036638 GO:0046983
Tsu04g01415 164 Pfam Helix-loop-helix DNA-binding domain 44 85 IPR011598 GO:0046983
Tsu04g01415 164 MobiDBLite consensus disorder prediction 1 18 - -
Tsu04g01415 164 CDD bHLH_AtIND_like 37 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01415 Tsu-Chr4 14564589 14565128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01415 28 89 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 58.065 5.18e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu04g01415 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01415 - - gmx:113000114 154.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01415 04 14564589 14565128 Tsu04g01415 04 14564589 14565128 ECH