Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01413 ATGAGAGACGCCATTGATGGAGGCTGTGAGACGGTGTATAGGACACGAGTGGTGCTGTGTTGTGCAAACGGTGCGGTGGGACGGAACGGAAAAGAGGCGAAGTGGCAAACCCTAACTCTTTTGATCAAACCATCATTTGGAATGAAGACTTTTGGAAGGAAGGAAACTCAACTTCAATATTTTCAGGGTAAGGAACTTCAATTTTTTCCATGGATTCTGATAGCATCCAAAGCAATAGATATAGATATGACGTGTTTATCAGTTTTAGAGGTGTTGACACCCGCAATACCTTTGTTGATCATCTCTACGCTCATCTCACTAGAAAAGGCAATTAAAGATTCACGGGTATCTATCGTTGTCTTCTCAAAAGATTATGCTTCATCAACATGGTGTTTGGATGAAATGGCTGCTATTGATGAATGCAGTAAAAGATTGAAACAAGTTGTTTTCCCTGTTTTCTATGACATTGATCCATCTCATGTGAGAAAACAAAATGGAGTGTATGAGGATGCCTTTGTTTTACACACCGAGCAACTCCATGGTCCAGACAAAGTTGCTCAATGGAAGAGTGCCATGGCCTCTTTGGCTGGATCAGCAGGTTGGGATGTTAGGGATAAGCCAGAGTTTGAAGAGATTGAAAAAATTGTCGAGGCtgtgataaaaaaattgggtcATAAATTCTCAGGGTCTGCTAATGACCTTATTGGAATACAACCTCGTTTAGAAGCATTAGAAAGCCTTTTAAAACTAAGCTCAAAGAACAGTGGTTTTCAAGTTTTAGGAATATGGGGGATGGGCGGAATAGGAAAGACAACTCTTGCGACTGTCTTGTATGACAGAATCTCATATCAATTCGACGCTTGCTGTTACATTGAGaatgtaattaaaatttatgaagATGGCGGTTCTATTGCTGTGCAGAAACAAATTCTTTGTCGTACTATAGAAGAAAAAATTCTAGACACACACAGTCCTTCTGAAATAGCAAGAATTGTAAGAAATAGGCTATGCAACATAAAGCTCCTTCTAGTTCTTGACAATGTTGATCAAATTGAGCAACTCCATGAATTGGATATAAAGCATGTATTGCTTCACCCAGAAAGTAGAATAGTCATAATCACTAGAGATGAGCATATTCTTAGAGCATATGGAGCAGATATAGTTTACGAGGTTGAATTGATGAATTGTAATGAAGCACATAAACTTTTGTGTAGAAAAGCCTTCATAAGTGATTATTCAAGCAGTACATTTGCAGAGCTGATTCCCGAGGTTTTAAAATATACTCAATGTCTTCCATTGGCAATTAGAGTAATTGGTTCTTTCTTGCACTCTCGAAATGCCAAGCAGTGGAAAGCTACCTTGGATAGATTGCGGAATAGTCCACCGGACAAAATATTGAAAGTACTTCAGGTAAGTTATGATGGACTAGatgaggaagaaaaagaaatatttctGCACATTGCTTGTTTCTTTAAAGGCGAGAGGAAGGATTATGTCAGCCGAATTCTAGATGCTTGTGGATTGCAGCCTGATATTGGAATTCCACTTCTTGCTGAAAAATCACTCATAGCCATTAAAAATGAGGAAATTCATATGCATGAAATGTTGCAAGTGTTGGGGAAGAAAATTGTTCAAGGACAACATCCAGATGAGCCGGGATTTTGGAGTAGGTTGTGGCTGTACAAGGATTTCCATTATGTGATGATGACTGAAAAGAAAGCAATAGAAGCTAAAGCCTTAATTCTAAATCGGAAAGAGGATGACTTGAACTTCAATGAGTTGAGGGCTGAAGATTTGTCAAAAATGGAGCACTTGAAATTGCTAATATTAAATCATCAGAATTTTTCAGGAAGACCCTCGTTTCTTTCTAATTCCCTACGTTATCTTTTGTGGAATGGTTACCCTTTCATTTCTTTGCCATCAAATTTTCATCCATATCACCTTGTTGAATTGAATTTGCCTAATAGCAGCATTGAACAACTATGGACAGACATCCAGCAATTACCATATTTGAAAAGGATGGATCTGAGCAACTCTAAAAATCTCAAGATGACCCCATGCTTTAAAGGGATGAAGAATCTTGAGCGACTAGATTTTGCAGGATGCATAAGCTTATGGCATGTTCATTCATCAATTGGACTTCTTACAGAACTTAAATTCTTGAGCTTGCAGAACTGTAGCAGTTTGATCTGCTTTGATTTTGGGAGTAATTCAAAGTCAAGTTCTCTGAGAGTTTTGTGTCTCTCTGGTTGCACAAAACTTGAAAATACTCCCGATTTCAGGGGATTATTAAATCTTGAGTATCTTGACATGGATCGATGTACAAGTTTATATACGATTCACAAATCTATTGGGGATCTTACAAAGCTTAGATTCTTAAGTTTGAGAGGCTGCACAAATCTGGTCAGAATACCTGACAGCTTTAACAATATGACATTTCTTATGACACTTGATCTATGCGGCTGCTCTAAATTTACGAATCTTCCACTGGGATCTATATCCAATTCTCAAAATCAACAATCTTTGGTTTTTCTTGACTTAAGTTTTTGCAATATTTCTGAAGTACCTGATGCTATTGGAGAATTAAGGGGTTTAGAGAGACTAAATTTACAGGGCAATAACTTCACTGAATTACCTATTACCATCGAAAGACTTTCCAGTCTATCATATTTAAACTTGTCTCATTGCCACGAGCTTTGTGTTTTCCCTATGCTCCCGATTGAAAGTGGTCAGACAGATTCAGTGGgacaatattttaaaacaatgtCTGGATCCCGTGATCACAGGTCAGGATTGTATACTTTTGATTGTCCCAAGCTGAGTGTAAGTTATTATAACACACCGTTACCTTATTTCCTCTCCAAACTCAGTAGAAGAGTGAGAAGATCAGAATGCGTTTCATTTAGATGGCTAAAAAGACTAGTTGAGGAACCTCATCACTTCCAGTGTGGCTTTGACAGTATTGTTCCTAAGTTTTCTGATGATTGTCTATGTAGTGCTGTTCCTCTTTGGTTTGATCACCAATTTAACAGGGTTTCAATAATAAGGATAAAGGAGTCTGATCTTCATGTCGACTGGCTCGGCTATGTTTTTGGTATAGTGTTTGAGGTGAATAATCATTCTGCAGTGTCTGGTTCTCAACATCAATCGCTTTCCTCAACACTGCCACATcctttttatctttcttttgaaAGCGATCATACGGAAGAATGCTTTGAAATGCCACTTAATTTGGAGCGGGATATGATTGGTGGAAAAGATTATGTTTGGACAATCTATATCTCTCGGGACCATTGCCATTTTGTGAAAACAGGAGCACAAATCACATTTAAAGCCAGCCAAAGAGTGATTATGAAGGAATGGGGGCTGCACATGCTAACCAAGAAAGACTTAGAGGACTCAGAAAAGAGAATAGGAAATAAGGatctgacaaaaaattgtccTATACTGGTCAGTGATAATGTAGAGGAAAGCAACAATAAATTTGACCCTAAAATCCAGCTTCCTTACAACTGGTTATTATCAGACGAAGATGAAGCCGTGATTGATGAAACTAAGAGGAAAGAAATTGATCTTTCTAATCTAGGCCTTTTGACAAATTAG 3603 0.3711 MRDAIDGGCETVYRTRVVLCCANGAVGRNGKEAKWQTLTLLIKPSFGMKTFGRKETQLQYFQGKELQFFPWILIASKAIDIDMTCLSVLEVLTPAIPLLIISTLISLEKAIKDSRVSIVVFSKDYASSTWCLDEMAAIDECSKRLKQVVFPVFYDIDPSHVRKQNGVYEDAFVLHTEQLHGPDKVAQWKSAMASLAGSAGWDVRDKPEFEEIEKIVEAVIKKLGHKFSGSANDLIGIQPRLEALESLLKLSSKNSGFQVLGIWGMGGIGKTTLATVLYDRISYQFDACCYIENVIKIYEDGGSIAVQKQILCRTIEEKILDTHSPSEIARIVRNRLCNIKLLLVLDNVDQIEQLHELDIKHVLLHPESRIVIITRDEHILRAYGADIVYEVELMNCNEAHKLLCRKAFISDYSSSTFAELIPEVLKYTQCLPLAIRVIGSFLHSRNAKQWKATLDRLRNSPPDKILKVLQVSYDGLDEEEKEIFLHIACFFKGERKDYVSRILDACGLQPDIGIPLLAEKSLIAIKNEEIHMHEMLQVLGKKIVQGQHPDEPGFWSRLWLYKDFHYVMMTEKKAIEAKALILNRKEDDLNFNELRAEDLSKMEHLKLLILNHQNFSGRPSFLSNSLRYLLWNGYPFISLPSNFHPYHLVELNLPNSSIEQLWTDIQQLPYLKRMDLSNSKNLKMTPCFKGMKNLERLDFAGCISLWHVHSSIGLLTELKFLSLQNCSSLICFDFGSNSKSSSLRVLCLSGCTKLENTPDFRGLLNLEYLDMDRCTSLYTIHKSIGDLTKLRFLSLRGCTNLVRIPDSFNNMTFLMTLDLCGCSKFTNLPLGSISNSQNQQSLVFLDLSFCNISEVPDAIGELRGLERLNLQGNNFTELPITIERLSSLSYLNLSHCHELCVFPMLPIESGQTDSVGQYFKTMSGSRDHRSGLYTFDCPKLSVSYYNTPLPYFLSKLSRRVRRSECVSFRWLKRLVEEPHHFQCGFDSIVPKFSDDCLCSAVPLWFDHQFNRVSIIRIKESDLHVDWLGYVFGIVFEVNNHSAVSGSQHQSLSSTLPHPFYLSFESDHTEECFEMPLNLERDMIGGKDYVWTIYISRDHCHFVKTGAQITFKASQRVIMKEWGLHMLTKKDLEDSEKRIGNKDLTKNCPILVSDNVEESNNKFDPKIQLPYNWLLSDEDEAVIDETKRKEIDLSNLGLLTN 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01413 1200 PRINTS Disease resistance protein signature 428 442 - -
Tsu04g01413 1200 PRINTS Disease resistance protein signature 335 349 - -
Tsu04g01413 1200 PRINTS Disease resistance protein signature 666 682 - -
Tsu04g01413 1200 PRINTS Disease resistance protein signature 259 274 - -
Tsu04g01413 1200 ProSiteProfiles TIR domain profile. 53 223 IPR000157 GO:0007165
Tsu04g01413 1200 SMART till_3 65 198 IPR000157 GO:0007165
Tsu04g01413 1200 Gene3D - 227 387 IPR027417 -
Tsu04g01413 1200 Pfam NB-ARC domain 249 465 IPR002182 GO:0043531
Tsu04g01413 1200 Pfam TIR domain 106 228 IPR000157 GO:0007165
Tsu04g01413 1200 SUPERFAMILY "Winged helix" DNA-binding domain 463 566 IPR036390 -
Tsu04g01413 1200 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 105 881 - -
Tsu04g01413 1200 SUPERFAMILY Toll/Interleukin receptor TIR domain 106 201 IPR035897 -
Tsu04g01413 1200 Gene3D Ribonuclease Inhibitor 836 923 IPR032675 -
Tsu04g01413 1200 Gene3D Ribonuclease Inhibitor 736 835 IPR032675 -
Tsu04g01413 1200 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 105 881 IPR044974 GO:0006952
Tsu04g01413 1200 Gene3D - 102 226 IPR035897 -
Tsu04g01413 1200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 487 IPR027417 -
Tsu04g01413 1200 Pfam Leucine rich repeat 842 897 IPR001611 GO:0005515
Tsu04g01413 1200 Pfam Leucine Rich Repeat 647 666 IPR011713 -
Tsu04g01413 1200 SUPERFAMILY L domain-like 596 903 - -
Tsu04g01413 1200 Gene3D - 394 477 IPR042197 -
Tsu04g01413 1200 Gene3D Ribonuclease Inhibitor 580 731 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01413 Tsu-Chr4 14508354 14544876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01413 736 903 WRKY Transcription Factor Family AT4G12020 36.686 6.78e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01413 - - mtr:MTR_5g005550 1301.19