Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01406 ATGAACCGTTCAGCCACCACATTGTTCATCATCTTCGCCACGTTGTGTTTCGTTTTAGAATTCGAAGCCAAAACAATCGACCCCTATAAGGTTCTCGGGGTTGATAAAACTGCAAGTCAACGAGAAATTCAGAAGGCTTTTCACAAACTCTCTCTTCAATATCATCCTGACAAGAACAAGGCCAAGGGTGCACAAGAGAAGTTTGCTCAGATAAATAACGCGTACGAGATTTTATCTGATGAACAAAAGAGGAAGAATTATGACTTATATGGAGATGAGAAAGGAAATCCTGGATTTGAAGCTGGCCACCCCGGAGGTCCTGGACATAGCGGCTTTAACTTCAGACCAGGGGAACAATGGAGTAGCGGTGGCCAGGGAGGCTCTAATTCATTCTCCTTTTCCTTTGGCGGAGGCTCTGGTGATTCTAATTCTTTTGGATTTGGTTTGGACGATCTTCTTGGCAACTTTTTCGGTGATTTTGGCAGTTCATTTAGGTCTCAATCTGGGCCCAAGAGTTCCCCCAAAAGTTTTAAAGCCATAAATTCAAATATCTACAAGAAAGAAATAGTTGATGAAGGAATGACTTGGCTTTTGTTATCTTATACACCCTCATTGAAGGGCATCCAACAGTTTGAGTCCACTATAGAGGAGATTTCCAGTACATTGCAAGGAGCTTTGaagGTTGGAAGCATTAACTGTGAAAAGGAAGTCTCATTATGTAAGGAGCTTGGTATATATCCGCGCAAAGCTCCAAGGATTTTTGTTTATTCTTACAAGGAGAATGAAAAGGGTTCTCTGGTGGAGTACGGTGGTAACTTGGCTGTTAAGGATTTGAAGGCTTTCTGTCAACAACACTTGCCAGGATTTTCAAAACGGATTGACTTGAATCAACTTGATCAAGTTGGTACTACTGGAAAGTTGCCTAGGGTGCTGCTTCTCTCTTCCAAAAAGAACACTCCTGTAATTTGGCGTGTTCTTAGTGGCTTGTATCGTAAACGCATTACTTTCGGTGATGTAGAGGTTCATGATTCTGATTTGAGAGTGGAAAAACTAGGAGTTGATGCACTTCCAGCTATTGTAGGTTGGCTACCTAATGGAGAAAAGGTTATTCTGAAAACAGGGGTTTTTGTGAAAGATGTAAAATCTGGTGTCCAAGATCTTAGTAACATACTTGATAGTTTTGAGAAAGTAAGTAAAAAGAAAACATCGAGTCAGTCCAAGAAAGCACAAGCTGATTCAGAAGACGGACACATTCAGTTGCTTTCTCGGTCAAACTTTGAGGCTCTCTGTGGGGAAAAAACTCCAGTTTGCATAATTGGTGCCTTTAGATCTTCGAAAGCAAGGGAAAAGCTAGAATCACGTCTCTCTttgGTCTCACAGATGTCCTTGTCAAGAAAACCAAATGGAGGCGGAAGCTCTAGGGACTCCATTTCCTACGCTGTCTTAGACGCTGCTAAGCAACAATCCTTTCTAAACGCATTTGACAAAACAGGTTATAAATCATCAGATAAGTTGTTGATTGCCTACAAACCTCGGAAAGGGAAATTCGCTGTATTTATGGGTGATATGACAATAGAGGAGGTAGAGAATTTTATCAGCTCCGTTCTAAGCGGAGATATACCCTTTAGGGAAACATATAAGAAGCCTGTACTCAAATAG 1659 0.4117 MNRSATTLFIIFATLCFVLEFEAKTIDPYKVLGVDKTASQREIQKAFHKLSLQYHPDKNKAKGAQEKFAQINNAYEILSDEQKRKNYDLYGDEKGNPGFEAGHPGGPGHSGFNFRPGEQWSSGGQGGSNSFSFSFGGGSGDSNSFGFGLDDLLGNFFGDFGSSFRSQSGPKSSPKSFKAINSNIYKKEIVDEGMTWLLLSYTPSLKGIQQFESTIEEISSTLQGALKVGSINCEKEVSLCKELGIYPRKAPRIFVYSYKENEKGSLVEYGGNLAVKDLKAFCQQHLPGFSKRIDLNQLDQVGTTGKLPRVLLLSSKKNTPVIWRVLSGLYRKRITFGDVEVHDSDLRVEKLGVDALPAIVGWLPNGEKVILKTGVFVKDVKSGVQDLSNILDSFEKVSKKKTSSQSKKAQADSEDGHIQLLSRSNFEALCGEKTPVCIIGAFRSSKAREKLESRLSLVSQMSLSRKPNGGGSSRDSISYAVLDAAKQQSFLNAFDKTGYKSSDKLLIAYKPRKGKFAVFMGDMTIEEVENFISSVLSGDIPFRETYKKPVLK 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01406 552 Coils Coil 61 81 - -
Tsu04g01406 552 Gene3D Glutaredoxin 175 294 - -
Tsu04g01406 552 CDD DnaJ 27 80 IPR001623 -
Tsu04g01406 552 Pfam DnaJ domain 27 88 IPR001623 -
Tsu04g01406 552 SMART dnaj_3 26 83 IPR001623 -
Tsu04g01406 552 PANTHER DNAJ PROTEIN ERDJ3A 7 552 - -
Tsu04g01406 552 CDD PDI_a_family 187 281 - -
Tsu04g01406 552 SUPERFAMILY Thioredoxin-like 178 288 IPR036249 -
Tsu04g01406 552 ProSiteProfiles dnaJ domain profile. 27 91 IPR001623 -
Tsu04g01406 552 Gene3D DnaJ domain 24 165 IPR036869 -
Tsu04g01406 552 PANTHER DNAJ PROTEIN ERDJ3A 7 552 - -
Tsu04g01406 552 SUPERFAMILY Chaperone J-domain 24 113 IPR036869 -
Tsu04g01406 552 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
Tsu04g01406 552 PRINTS DnaJ domain signature 29 47 IPR001623 -
Tsu04g01406 552 PRINTS DnaJ domain signature 47 62 IPR001623 -
Tsu04g01406 552 PRINTS DnaJ domain signature 63 83 IPR001623 -
Tsu04g01406 552 PRINTS DnaJ domain signature 83 102 IPR001623 -
Tsu04g01406 552 SUPERFAMILY Thioredoxin-like 416 541 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01406 Tsu-Chr4 14466434 14470247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01406 29 90 C2H2 Transcription Factor Family AT1G74250 42.647 2.38e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01406 - - gmx:100796871 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01406 04 14466434 14470247 Tsu04g01406 04 14466434 14470247 ECH