Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01400 ATGCCTAAGCGACCGTTTGGGGCTATGTTGGGGGAAGGAAGTGCAAGTTCCAGTTCTAGTTCTAGTTCTTATAAGGATTATATATATGATGTGTTTATCAGCTTCAGAGGTACTGACACGCGCAACACTTTCGTTGACCATCTCTACGCTCATCTCACTAGAAAAGGTATTTTTGTCTTCAAAGATGACAAACAACTTCAAAAAGGTGAATCCATCTCACCTCAACTTCAACAGGCAATTCAACATTCACGACTTTCTATTATTGTTTTCTCAAAAGATTATGCTTCCTCAACTTGGTGTTTAGATGAAATGGCTGCTATTGCTGATTGTCGTGCTGATTTGAAACAAATTGTGTTTCCTATTTTCTATGATGTGGATCCATCTCATGTACGAAAGCAAAATGGAGTTTATGAGAGTGCTTTTGTTTTACACACTAAGACATTCAAAGATGATCAACACAAGGTTGATAGGTGGAAGAGAGCTATGACTTGTTTCGCTGGATTAGTTGGTTGTGATGTCAGGAATAAGCAAGAAGTTGAAGAGATTGAAAATATTGCCCAGACTGTAATAGAAAAGTTGGGTCATAAATTTTCAGGGTATGCTGATGACCTTATCGGAATACAACCTCAAGTAAAAGCATTAGAAAAACTTTTAAAACTAAGCTCACATGATGACCATTGTCTAGTTTTAGGAATATGGGGGATGGATGGCATAGGAAAGACGACTCTTGCAACTGTCTTGTATGACAAAATCTCACATCACTACCAATATGGTGCTTGTTGTTTTATCCACAATGTTAGCGCAATTTATAAAGATGGTGGTGCTATTGCTGTCCAGAAACAGATTCTTCAACaaactctgaaagaaaaaaatctggATGAATACAGTCCCTCTGAAATATCTGGAATTATAACAAAGAGGCTATTTAACAGGAAAATCCTTATAGTTCTTGACGATGTTGATCAAATTGAGCAGCTACAAGAATTGCACATAAAGACCAAATTGCTTTGTCCTGGAAGTAGAATAATCGTAACCACTAGAGATGTGCATATTCTTAAATTGTTTGGAACGCATAAAATTCACAAGGTCAAATTGATGAACGAAAATGATGCTCGGGAACTTCTATGCAGAAAAGCCTTTAAAACTGATAATTCAAGTGGTCATGCAGAACTTATTCCTAAGGTGCTAGAATACACTCAAGGTCTTCCATTAGCAATTAGAGTAATGGGTTCTTTCTTGTATCAGAGACCAACCACTCAATGGAGAGCTACCTTGGAAAGATTGAAGAATAATCCAAATAGTGGAATTAACAAAGTGCTTCAGTCGAGTTTCAAGGGACTCGATGacatagaaaaagaaatatttttgcaCGTTGCTTGTTTCTTTGAAGGGGAGAGGGAGGATTATGGGAGGCGAATTCTAGATGCTTGTGGAACACAACCTGATATTGGAATTTCACTTCTTGCTGAAAAGTCATTCATAACCATTACAAACCAGGAAATTCATATGCATAAAATGTTGCAAGAGCTGGGGAAGCAAATTGTTCGGGAACAACATCCTGATGAGCCAAGATTATGGAGTAGATTGTGGCTTTATCGTGATCTTCATGATGCGATGATTACAAAACTGGAAGTAATAAAAGCTAAAGCCataattttaaatcaaaagGAGGatgtttctaatttcaatcagctGAGTGATGAAGATTTaccaaaaattgaaaacttgAAAGTGCTCAtattaaataattcaaatttttcagGAAGCCCCAAATTTCTTTCTGATTCCCTATGCTATCTTATGTGGAAAGGTTACCCTTTCAGGTCTTTTCCATCAAAATTTCAACCATATAATCTTGTGGAATTGAATATGCCTAATAGCAACATTGAACAATTGTGGATAGGCATCCAGCGTCTCCCCAAATTAAAAAGGATGGACCTTAGCAACTCCAAAAATCTGAAGGTGACTCCGTGCTTTGAAGTGATACAAAATCTTGAGCGGCTAGATTTTACAGGATGCATTAACTTGTTGGAGGTGCATCCATCAATTGGACTTCTTACAAAACTTGTATTCTTGAGTTTGCATAACTGTACTAGTCTAGTCACCCTTGATTTTGGAAATGCAACAAGATTAAGGTCTCTAAAAGTTTTGCATCTCTCTGGATGTACAAAACTTGAAAAAACGCCGAATTTTAGTGGCTTATCAAATCTCGAGTACCTTGATATGGATCGATGTGCAAGTTTATCCACACTTCATGAATCTGTTGGGGCTCTTGCAGAGCTTAGATTTTTAAGTTTGAGATACTGCAAAAATCTTGTTGAAATACCTGCACAAATAATGAGATCTCTTACAACTCTAGATCTTTTTGGATGCTTTAAATTTAATAAGCTGCTATTGAATCGGATTTCCAATTCTTCTCTGCAATCTTTGATTTTTCTAGACTTAAGTTTTTGCAATATTTCTGAAGTACCTAATGCTATTGGAGAATTCAAGTGTTTAGAAAGACTAAATCTTCAGGGAAATAACTTTACTGAACTACCCTCCAGTTTTGGTAGACTTCACAATCTATCATATTTAAACTTGTCACATTGTCATAAGCTTCAAAGTTTGCCTTATCTCCCAACACAAAGTGGTCCATCAGATTCAGTGGGAAGATATTTTAAGACAACATCTGGATCCCGTAATCATAGATCAggattatatatttttgactCTCCCAATTGCATGATGATAAGATCCTCCTCTAGAGAATATTCCTATCAGCACTTCATTAAATGGGTGCCAAGACTAGTTAAGAATCCTGCTCACTTTCGGTGTGGCTTTGACATTGTTCTTCCTTGGCATGAGGAAACTGGCTATGGAAATCGAATCATTGCAAAGACTTTCCATCACTGGTTTAAAGGAGGTTCAATATTAAGGATAAATGACCCTGTTATGGATGTTGACTGGCTCGGCTTTCTCTTTTATGTAAAATTTGAGTTAAGTTTTCATCCTGTACTATCTAGTTATTCACATCAATCGCTCTCTTCGTCACTACCACATcctttttatctttcttttgagAGTGAATACACAGAAGAACGATTTGATATGCCACTTAATTTGGAATCAAACCAGGTTGATGGAAAACATTACCTTTGGATGATCTATATCTCTCGGCAACATTGCCATTTTGTAAAAACAGGAGCACACATCACATTAAAATCCCGCCAAGGTTTGATTATCAAGGAATGGGGGTTACGTGCCATAACCAAGAAAGACACAGAGGACTCAAGAATGAAAAGGAGCGTACATCTTTCTTTAGAGAATGTGAAAGTAAAACAAAGAAACACCAGCAGCTTTGAGCCTAAAATCCAACTTCCTTACAATTGGTTAGTTTCTGACAAAGATGAAGCTGAGAGGGATGAAGCCAAGGGAAAAGAAACTGATCTCTTCAGTCTTGGCCTTTTTACTGAAATATCACAGTGA 3468 0.3576 MPKRPFGAMLGEGSASSSSSSSSYKDYIYDVFISFRGTDTRNTFVDHLYAHLTRKGIFVFKDDKQLQKGESISPQLQQAIQHSRLSIIVFSKDYASSTWCLDEMAAIADCRADLKQIVFPIFYDVDPSHVRKQNGVYESAFVLHTKTFKDDQHKVDRWKRAMTCFAGLVGCDVRNKQEVEEIENIAQTVIEKLGHKFSGYADDLIGIQPQVKALEKLLKLSSHDDHCLVLGIWGMDGIGKTTLATVLYDKISHHYQYGACCFIHNVSAIYKDGGAIAVQKQILQQTLKEKNLDEYSPSEISGIITKRLFNRKILIVLDDVDQIEQLQELHIKTKLLCPGSRIIVTTRDVHILKLFGTHKIHKVKLMNENDARELLCRKAFKTDNSSGHAELIPKVLEYTQGLPLAIRVMGSFLYQRPTTQWRATLERLKNNPNSGINKVLQSSFKGLDDIEKEIFLHVACFFEGEREDYGRRILDACGTQPDIGISLLAEKSFITITNQEIHMHKMLQELGKQIVREQHPDEPRLWSRLWLYRDLHDAMITKLEVIKAKAIILNQKEDVSNFNQLSDEDLPKIENLKVLILNNSNFSGSPKFLSDSLCYLMWKGYPFRSFPSKFQPYNLVELNMPNSNIEQLWIGIQRLPKLKRMDLSNSKNLKVTPCFEVIQNLERLDFTGCINLLEVHPSIGLLTKLVFLSLHNCTSLVTLDFGNATRLRSLKVLHLSGCTKLEKTPNFSGLSNLEYLDMDRCASLSTLHESVGALAELRFLSLRYCKNLVEIPAQIMRSLTTLDLFGCFKFNKLLLNRISNSSLQSLIFLDLSFCNISEVPNAIGEFKCLERLNLQGNNFTELPSSFGRLHNLSYLNLSHCHKLQSLPYLPTQSGPSDSVGRYFKTTSGSRNHRSGLYIFDSPNCMMIRSSSREYSYQHFIKWVPRLVKNPAHFRCGFDIVLPWHEETGYGNRIIAKTFHHWFKGGSILRINDPVMDVDWLGFLFYVKFELSFHPVLSSYSHQSLSSSLPHPFYLSFESEYTEERFDMPLNLESNQVDGKHYLWMIYISRQHCHFVKTGAHITLKSRQGLIIKEWGLRAITKKDTEDSRMKRSVHLSLENVKVKQRNTSSFEPKIQLPYNWLVSDKDEAERDEAKGKETDLFSLGLFTEISQ 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01400 1155 Pfam TIR domain 29 197 IPR000157 GO:0007165
Tsu04g01400 1155 Gene3D - 200 360 IPR027417 -
Tsu04g01400 1155 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 728 791 - -
Tsu04g01400 1155 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 30 728 - -
Tsu04g01400 1155 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 761 870 - -
Tsu04g01400 1155 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 170 IPR035897 -
Tsu04g01400 1155 PRINTS Disease resistance protein signature 399 413 - -
Tsu04g01400 1155 PRINTS Disease resistance protein signature 637 653 - -
Tsu04g01400 1155 PRINTS Disease resistance protein signature 307 321 - -
Tsu04g01400 1155 PRINTS Disease resistance protein signature 229 244 - -
Tsu04g01400 1155 ProSiteProfiles TIR domain profile. 27 193 IPR000157 GO:0007165
Tsu04g01400 1155 SMART LRR_typ_2 807 829 IPR003591 -
Tsu04g01400 1155 SMART LRR_typ_2 830 853 IPR003591 -
Tsu04g01400 1155 SMART LRR_typ_2 734 758 IPR003591 -
Tsu04g01400 1155 Gene3D - 26 199 IPR035897 -
Tsu04g01400 1155 Pfam Leucine Rich Repeat 618 637 IPR011713 -
Tsu04g01400 1155 Gene3D - 365 448 IPR042197 -
Tsu04g01400 1155 Gene3D Ribonuclease Inhibitor 543 710 IPR032675 -
Tsu04g01400 1155 Gene3D Ribonuclease Inhibitor 801 885 IPR032675 -
Tsu04g01400 1155 Gene3D Ribonuclease Inhibitor 711 800 IPR032675 -
Tsu04g01400 1155 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 728 791 IPR044974 GO:0006952
Tsu04g01400 1155 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 761 870 IPR044974 GO:0006952
Tsu04g01400 1155 SMART till_3 28 168 IPR000157 GO:0007165
Tsu04g01400 1155 MobiDBLite consensus disorder prediction 1 22 - -
Tsu04g01400 1155 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 30 728 IPR044974 GO:0006952
Tsu04g01400 1155 SUPERFAMILY L domain-like 563 872 - -
Tsu04g01400 1155 Pfam NB-ARC domain 219 447 IPR002182 GO:0043531
Tsu04g01400 1155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 457 IPR027417 -
Tsu04g01400 1155 SUPERFAMILY "Winged helix" DNA-binding domain 436 536 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01400 Tsu-Chr4 14390040 14397839 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01400 709 871 WRKY Transcription Factor Family AT4G12020 34.545 5.75e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01400 - - mtr:MTR_5g005550 1350.5