Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01398 ATGTCACACTCTTGGATACCCCGTCTCCCGCATAAAATTCGGGCCCTGACTAGTCGTCGGCCATCGGTTCAGAGAGGTACAGATGATAAAACCCGAAGCTATAGATACGATGTGTTTATCAGTTTCAGAGGTTCCGACACACGCAACACCTTTGTTGACCATCTCTACTCTCATCTAATTAGAAAAGGTATTTTCACTTTCAAAGGTGACAAACAACTTCAGAAAGGTGAATCCATTTCACCTCAACTTCTACAGGCAATTCAAGATTCACGGGTTTCTATTGTTGTCTTCTCGAAAGATTATGCTTCATCAACTTGGTGTTTAGATGAAATGGCTGCTATTGCTGACTGCCGTGCgaaatttaaacaaattgtGTTTCCTGTTTTCTATGATGTCGATCCATCTCATGTGCGAAAACAGAATGGATTTTATGAGAGTGCTTTTGTTTTACACACTGAGACATTCAAAGATGATCCGCAAAAGGTTTATAGGTGGAAGAAAGCTATGACCTGTTTTGCTACATCAGCTGGTTGGGATGTCAGGAATAAGCAAGAAGTTGAAGAGATTGAAAAAATCGTCCAGGCTGTAATAGAAAAGTTGGGCCATAGGTTCTCAGGGAATGCTGATGACCTTATCGGAATGCAACCCCAAGTAAAAGCATTAGAAAAACTTTTAAAACTAAGCTCACATGATGACCGTTGTCTAGTTTTAGGAATATGGGGGATGGATGGCATAGGAAAGACGACTCTTGCAACTGTCTTGTATGACACAATCTCACATCACTACCAAAATGGTGCTTGTTGTTTTATCCACAATGTTAGCACAATTTATAAAGATGGTGGTGCTATTGCTGTCCAGAAACAAATTCTTCATCaaactctgaaagaaaaaaatctggATGCATACAGTCCCTCTGAAATATCTGGAATTATAACAAAGAGGCTATTTAACATGAAGCTCCTTGTAGTTCTTGACGATGTTGATCATATTGAGCAACTACAAGAATTGCACATAAAGATCAATTTGCTTTGTCCTGGAAGTAGAATAATCATAACCACTAGAGATTTGCATATTCTTGAATTGTATGGAGCGGATGGAATTCATGAGGTTGAATTGATGAATGATAATGATGCTCAGGAACTTCTATGTAGAAAAGCTTCTAAAACGGTTGATAATTCAAGCAATGATTATGCAGAACTTATTCCTAAGGTTTTAAAATATGCTCAAGGTCTTCCATTAGCAATTAGAGTAATGGGTTCTTTCTTGTATAATAGAAATACCACCCAATGGAGAGCTACCTTGAAAGGATTGGAGAATAAtccagatggtggaattatgaAAGTGCTACGGTCAAGTTTTGAGGGCCTAGAGCCAAGAGAGAAAGAAATCTTTTTGCACGTAGCTTGCTTCTTTGAAGGGGAGAGGGAGGATTATGTAGGCCGAATTCTAGATGCTTGTGGATTGCAACCTGAAATTGGAATTTCACTTCTTGCTGAAAAATCGTTTATAACCATTAGAAATCAAGAAATTCATATGCATAAAATGTTGCAAGAGTTGGGAAAGAAAATTGTTCGGGAACAACATCCTGATGAGCCAAGATTATGGAATAGATTATGGCTTTACCGTGATCTCCATGATGCGATGCTTACAAAACCGGAAGCAATAAAAGCCAAAGCCATAATTCTAAATCAAAAGGAGGATGTTTCCAATTTCAATCAACCGAGGGATGAAGATTTATTGAAAATGGAAAACTTGAAGTTGCTCATAGTAGATCATTCATATTGTTCAGGAAGCCCCAAATTTCTTTCCGATTCCCTTTGCTATCTTATGTGGAAAGGTTACCCTTTCTCGTCTTTTCCATCAAAATTTCAACCATATAATCTTGTGGAATTGAATATGCCGGATAGCAACATTGAACAATTATGGATAGGCATCCAGGATCTCCCCGCATTGAAAAGGATGGATATGAGCAACTCCAAAAATTTGAAGGTGACTCCACGCTTTGAAGGGATGAAAAATCTTGAACGGCTTGATCTTACGGGATGCATAAGTTTGTTGGAGGTGCATCCATCAATTGGAGATCTTACAAAACTTGAATTCTTGAGTTTGCAAAACTGTACTAGTCTAGTCACCCTTGTTTTTCGCTATACACCAAGACTAATGTCTTTGAGAGTTCTTAGTCTCTCTAGCTGTGCAAAACTTGAAAACACACTGAATTTTAGTGGATTATCAAATCTTGAGTATCTTGATATGGATCGATGTGCAAGTTTATCCACAATTCATGAATCTGTTGGGGCTCTTGCAGAGCTTAAATTTTTAAGTTTGAGATACTGCACAAATCTTGTTGGAATACCTGACGGCCTTAATAATATGACATCTCTTACAACTCTAGATCTATATGGCTGCTCAAAATTGACCAATCTGCCCCCGAGAGTTTTCAATTATTCTTCTCCCCTGGAATCCTTGATTTTTCTGGACTTGAGCTTTTGCAATATTTCTAAACTACCTGATCATATTGGAAATTTAAGGTGTTTAGAAAGGCTAAATCTTCAGGGAAATAACTTTGCCGAAGTTCCCTCCTTCCATGGACTTCAATTTCTATCATATTTAAACTTGTCTCATTGTCATAAGCTTCAAAGATTGCCTCATCTCCCAACAGAAAGTGGTCCATCAGATTTAGCAGGAAGATATTTTAAAACAACATCTGGATCCCGTAATCATAGATCAGGAATATATGTGTTTGACTGTCCCAATTGCTCGTTTGATTTAACAGCCAACAAGGCCATCATCGCCATCTCTAGTTGGATACAAAGATTACTTAAGgCGCCTCTTTGCTTTCGATGTGGCTTTGACATTGTTCTTTCTTCGAAAAAGAATTTTAGCATTTCATACATGTTCTATTACCGGTTTAAAGGGGGTTCAATAGTAAGGATAAATGACCCTGTTGTTATGGATGTCGACTGGCTCGGCTTTCTCTTTTGTGTAACGTTTGAGTTAAATAATCACCCTGAACTATCTAGTTCTTCACATCAATCACTCTCTTCATCACTGCCGCATCCTTTTTATCTTTCATTTGGGAGGGAATACACAGAAGAACGCTTTGATATGCCACTTAATTTGGAATCAGACAAGGTTGATGGCTTAAACAATGATTGGGTAATCTATATATCCCGGGAACATTGCCATTTTGTGAAAACAGGAGCACACATCACATTTAAAGCCCGCCAAGGTTTGATTATCAAGCAATGGGGGTTGCGTGTCATAACCAAGAAAGACACAAAGGACTCATTAAACATGGGTCGAAAGGGATCAAATCTTCCTTTAGAGACTGTGGAAGTAACAGAAAGCAGCAACGTTAACCGTAGCTTTGAGCCCAAAATTCAACTTCCTTACAATTGGTTTGTTTCTGACAAAGATGAAGCTGAGAGGGATGAAGCCAAGGGAAAAGAAACTGATCTCTTTAATCTTGGCCTTTTAACTGAAAGTTCACAATGA 3495 0.378 MSHSWIPRLPHKIRALTSRRPSVQRGTDDKTRSYRYDVFISFRGSDTRNTFVDHLYSHLIRKGIFTFKGDKQLQKGESISPQLLQAIQDSRVSIVVFSKDYASSTWCLDEMAAIADCRAKFKQIVFPVFYDVDPSHVRKQNGFYESAFVLHTETFKDDPQKVYRWKKAMTCFATSAGWDVRNKQEVEEIEKIVQAVIEKLGHRFSGNADDLIGMQPQVKALEKLLKLSSHDDRCLVLGIWGMDGIGKTTLATVLYDTISHHYQNGACCFIHNVSTIYKDGGAIAVQKQILHQTLKEKNLDAYSPSEISGIITKRLFNMKLLVVLDDVDHIEQLQELHIKINLLCPGSRIIITTRDLHILELYGADGIHEVELMNDNDAQELLCRKASKTVDNSSNDYAELIPKVLKYAQGLPLAIRVMGSFLYNRNTTQWRATLKGLENNPDGGIMKVLRSSFEGLEPREKEIFLHVACFFEGEREDYVGRILDACGLQPEIGISLLAEKSFITIRNQEIHMHKMLQELGKKIVREQHPDEPRLWNRLWLYRDLHDAMLTKPEAIKAKAIILNQKEDVSNFNQPRDEDLLKMENLKLLIVDHSYCSGSPKFLSDSLCYLMWKGYPFSSFPSKFQPYNLVELNMPDSNIEQLWIGIQDLPALKRMDMSNSKNLKVTPRFEGMKNLERLDLTGCISLLEVHPSIGDLTKLEFLSLQNCTSLVTLVFRYTPRLMSLRVLSLSSCAKLENTLNFSGLSNLEYLDMDRCASLSTIHESVGALAELKFLSLRYCTNLVGIPDGLNNMTSLTTLDLYGCSKLTNLPPRVFNYSSPLESLIFLDLSFCNISKLPDHIGNLRCLERLNLQGNNFAEVPSFHGLQFLSYLNLSHCHKLQRLPHLPTESGPSDLAGRYFKTTSGSRNHRSGIYVFDCPNCSFDLTANKAIIAISSWIQRLLKAPLCFRCGFDIVLSSKKNFSISYMFYYRFKGGSIVRINDPVVMDVDWLGFLFCVTFELNNHPELSSSSHQSLSSSLPHPFYLSFGREYTEERFDMPLNLESDKVDGLNNDWVIYISREHCHFVKTGAHITFKARQGLIIKQWGLRVITKKDTKDSLNMGRKGSNLPLETVEVTESSNVNRSFEPKIQLPYNWFVSDKDEAERDEAKGKETDLFNLGLLTESSQ 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01398 1164 PRINTS Disease resistance protein signature 789 805 - -
Tsu04g01398 1164 PRINTS Disease resistance protein signature 408 422 - -
Tsu04g01398 1164 PRINTS Disease resistance protein signature 314 328 - -
Tsu04g01398 1164 PRINTS Disease resistance protein signature 236 251 - -
Tsu04g01398 1164 Gene3D - 32 205 IPR035897 -
Tsu04g01398 1164 Gene3D - 206 364 IPR027417 -
Tsu04g01398 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 466 IPR027417 -
Tsu04g01398 1164 ProSiteProfiles Leucine-rich repeat profile. 844 865 IPR001611 GO:0005515
Tsu04g01398 1164 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 35 883 IPR044974 GO:0006952
Tsu04g01398 1164 Gene3D - 373 457 IPR042197 -
Tsu04g01398 1164 Gene3D Ribonuclease Inhibitor 564 718 IPR032675 -
Tsu04g01398 1164 SMART till_3 35 175 IPR000157 GO:0007165
Tsu04g01398 1164 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)-RELATED 35 883 - -
Tsu04g01398 1164 Pfam NB-ARC domain 226 446 IPR002182 GO:0043531
Tsu04g01398 1164 Pfam Leucine Rich Repeat 627 646 IPR011713 -
Tsu04g01398 1164 SUPERFAMILY L domain-like 579 883 - -
Tsu04g01398 1164 SUPERFAMILY "Winged helix" DNA-binding domain 445 545 IPR036390 -
Tsu04g01398 1164 Pfam TIR domain 36 204 IPR000157 GO:0007165
Tsu04g01398 1164 SMART LRR_typ_2 842 863 IPR003591 -
Tsu04g01398 1164 SMART LRR_typ_2 743 767 IPR003591 -
Tsu04g01398 1164 SMART LRR_typ_2 819 841 IPR003591 -
Tsu04g01398 1164 SMART LRR_typ_2 791 815 IPR003591 -
Tsu04g01398 1164 Gene3D Ribonuclease Inhibitor 719 814 IPR032675 -
Tsu04g01398 1164 Gene3D Ribonuclease Inhibitor 815 940 IPR032675 -
Tsu04g01398 1164 ProSiteProfiles TIR domain profile. 34 200 IPR000157 GO:0007165
Tsu04g01398 1164 SUPERFAMILY Toll/Interleukin receptor TIR domain 31 178 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01398 Tsu-Chr4 14324571 14334482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01398 31 848 WRKY Transcription Factor Family AT4G12020 30.083 9.56e-80 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01398 - - mtr:MTR_5g005550 1348.57