Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01381 aTGGAGGGTCATCAtctccatcatcatcaacaacatcaacaacaacatcatcatcaacaacaacaacaacaaagacaacaacaacaacagcatcAACAACATGCTCATAACATCATAGGTACTAGTGGTGTTAACGTTGATGTCACAGATAGATTTCCTCAATGGAGTATCCAAGAAACAAAAGAGTTTCTTATGATCCGTTCTGATCTTGATCAAACTTTCATGGAGACAAAGAGGAATAAGCAACTTTGGGAAGTTATCTCTAACAATATGAAGGAAAAAGGTTATCATAGAAGTGCTGAACAGTGTAAGTGCAAGTGGAAAAACCTTGTTACTCGCTATAAGGGATGTGAAACAATGGAGCTAGAAGCTATGAGACAACAATTTCCATATTACAATGAGCTTCAAGCTATTTTCAGTGCAAGGATGCAAAGAATGCTTTGGGCTGAAGCAGAAGGAGGATCAAAGAAGAAAGGGATGCATGTATCTTCTGAGGATGAAGAAGAGTTAGGAAATGAAGAGAGTGAGGGAGATCACAAAGGCAAcattaagaaaaagaagaaaaagggtaAAATGGTAATTGGTGGAGGAAATGATAGTGGTAGTAATAGCAACAATTTGAAGGAGCTTCTTGAGGAGTTTATGAAGCAACAAATGCAAATGGAAGCTCAATGGATGGAAGCATTTGAGGCAAGAGAGAATGAGAGAAGGTTGAAGGAAATGGAATGGAGACAAACAATGGAAGCATTGGAGAATGAGAGGATAATGATGGAACAAAGATGGAGAGAAAGGGAAGAACAAAGAAGGATTAGAGAAGAAGCTAGGGCTGAAAAAAGAGATGCATTAATCACTGCTCTTCTTGATAAGCTCACAAGAGAAGACATGTAG 888 0.3423 MEGHHLHHHQQHQQQHHHQQQQQQRQQQQQHQQHAHNIIGTSGVNVDVTDRFPQWSIQETKEFLMIRSDLDQTFMETKRNKQLWEVISNNMKEKGYHRSAEQCKCKWKNLVTRYKGCETMELEAMRQQFPYYNELQAIFSARMQRMLWAEAEGGSKKKGMHVSSEDEEELGNEESEGDHKGNIKKKKKKGKMVIGGGNDSGSNSNNLKELLEEFMKQQMQMEAQWMEAFEARENERRLKEMEWRQTMEALENERIMMEQRWREREEQRRIREEARAEKRDALITALLDKLTREDM 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01381 295 ProSiteProfiles Myb-like domain profile. 55 111 IPR001005 -
Tsu04g01381 295 Coils Coil 204 224 - -
Tsu04g01381 295 MobiDBLite consensus disorder prediction 1 41 - -
Tsu04g01381 295 MobiDBLite consensus disorder prediction 152 205 - -
Tsu04g01381 295 Gene3D - 55 116 - -
Tsu04g01381 295 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 1 293 - -
Tsu04g01381 295 CDD GT1 53 118 - -
Tsu04g01381 295 MobiDBLite consensus disorder prediction 152 166 - -
Tsu04g01381 295 PANTHER - 1 293 - -
Tsu04g01381 295 Coils Coil 240 267 - -
Tsu04g01381 295 Pfam Myb/SANT-like DNA-binding domain 54 138 IPR044822 -
Tsu04g01381 295 MobiDBLite consensus disorder prediction 16 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01381 Tsu-Chr4 14169533 14171340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01381 30 293 Trihelix Transcription Factor Family AT2G38250 53.069 1.87e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tsu04g01381 Myb_DNA-bind_4 4.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01381 - - gmx:100778195 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01381 04 14169533 14171340 Tsu04g01381 04 14169533 14171340 ECH