Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01380 ATGGCAAAAGTTAATATCCATAAGTCCCAATTTATGATCACACAGCTCTCAGATCACACAGCCACGAAATCGCGATATTCTCCTTCGTCTTCGCCGTCGTCCTCTCCTTCGCCGTCGTCGTCTTCATCGTCGTATTATCCATCGTCGTCGTCGTATTCTCCATCGTCTTCTCCGTTCTCCATCGTCGTCGCACTCCTTGTTCCTTTCGAGAACCGAACTGCTCAGGCTGTTGCGTGGGCTAGTCTGAAACATCTACTAGTGCCGCAACCAATGCCCTGCAGTGATAATTGTGACTGGTTTGCTGCTGTGCAAATGGACAAAGCTACTGCAGATTTTGAGAAAATGTACTCTTTCAATGCAAGTGCCATAGAGATAGACGGCGTGAATAATACGATAATTATGCAAGGTTTGGAGGGATTGAACTACCTTGTTGGAGAAACAGATGGAGCTGACCCTCAGAGAGATCCTAAAGTGCCTGGCAAACAACAGTCAGTAATCTCATTCACAAAGAAAACTACTCCTGGAATCAGTATTGTTCGTGggtgctcaaatcatatgacaGGGAACAAGAGTATTTTGACTGATTTCAACAAGTGTCTTAATACGAGGATCAAACTGGCCAATGGTAATTTTATTGCAGCTGAAGGCATGGGAAATGTGGTGATTCAGAGGAGCAATGGAAAGAAGGCAGTTATTGAGAAGGTCCTATATGTGCCAGGGATGAAGTGTAATCTGATGAGTGTAGGTCAATTGCTTGAGAAAGGTTTCAAAGCAGTGTTTGAAGGTGAAACACTGAAGCTCTTTGATTCAAAGcagagattgatcttgaaaaTAGCTCAAAGTCAAAACAGAACCTTCAAGACACAAGTTAAGACAATTGAAGTTGAATTCTTAGCTACATCTACTGAAGATAAGGACAGTGACTTATGGCACAGaaggtatggtcatttgaatttcaaaagcttgtcaATGCTTAATTCAAAGAACATGGTGTTAGGACTGCCTAGTGTTATAGCTCCAGTAGATACTTGCACTACATGTTTGTTAGGGAAACATCCTAGATCACCATTCAAAAGTAATTTGCTTATGAGATCTAGTGAAGTGTTAAATGTTGTGCATTCAGACATTTGTGgaccaattgatgtgttatcaactggtggaaacaaatatttcatcacatttgtgGATGAGTACTCAAGGATGATATGGCTGTATCACATAAAAGCTAAGAGTGAagcttttgaagtgtttaagagatttaaaacaCTAGTTGAGAAACAAAGTGATAAGTCAATCAAGGTACTTAGAACagatggtggaggagagtacACATCAAAGGAATTTGAGAATTATTGCAAAGATCAAGGCATAATTCATGAGGTTACAGCACCATATACTCCTCAGCATAATGGACTTGCTGAGAGGAGAAATCGGAGTATCCTAGATATGGCAAGGAGTATGGTAAAGCAGAAGGGTTTGCCACATAGGTTTTGGGGTGAAGCTGTGTCTACAGCTGTGTACATTCTAAACAGAAGTCCAACAAAGAAGTTGATAGACAAGGTACCTGAAGAGGTGTGGTCTAAGTGCAAACCAAGTGTGACTCACTTCAAAGTGTTTGGTTCCTTGAGTTACAAGCATGTACCTGATGCTAGAAGGAAGAAGTTGGATGATAAGAGTGAACCTATGGTCTTTGTTGGATATCATAGAACTGGGGCATATAGACTGTATAATCCCACATCAGACAAGATAGAgatcagtagagatgtgaaggtcttggaaaatgaaagctgggattggaaacagaaatccacatctaagaaaacttgtgaagtggacttggatgttggaacatcagaagcaaatgctccagtaacttttgttgatcaacatcaacatcaggaGAATCATAATGAGGAAGATGCCTCAAGTGATGAGGATAATGGAAGACACCTACCAGTAAGGACTCACAGAACTACTCAAATCCCAAGAAGATTAGCAGATTGTGATATGGTTCCAGATAATGTTGTAGACAATGAGGGGAACATTGTGCACTATGCTATGCTAGCAGACACTGAACCTCTAGATGTCAGGAGTGCACTAAAGAGTAAAGTGTGGTTAGaagcaatgattgatgagttaaagTCAATTGAGAAGAACAGGACATGGGACATATGCAAGCTTCCTtcagataaaagagcaattgatgtgaaatgggtgtataagcTGAAGCAAAATCCTGAAGGTCAAGGGATCAAGCAtaaggcaaggcttgtggcCAAAGGGTTTCTGCAAAAGCAAGGATTAGACTATGATGAAGTCTTCTCTCCTGTGGCTAGACATGAGACTATAAGGTTAGTAATAGCACTAGCTTGTAGTAGAAGATGGCCTATGATCCACTTAGATGTAAAGTCAgcatttctaaatggtccattgGAAGAAGATGTATATGTGAAGCAACCACCTGGCTTTGAGTTGAAAGGCATGGAAGATAGGGTGCTGAAACTGAACAAAGCTTTGTATGGCTTGAAGCAAGCCCCAAGAGCatggaacaagagaattgacCAATTTCTTGTTATGCAAAGTTTTGTGAAATGTAGTGTTGAATATGGTGTTTATGTGAAACACAGTGATGACAGGCATATGTTaatcatatgtttgtatgttgatgatttgctaGTGACTGGCAGCTCACCCATGGAGATTGAGAATTTTAAATCACAAATGAagagtgaatttgaaatgactgatTTGGGAAAATTGACTTACTTTCTGGGAATGGAACTCCTAGAAACACCAAAAGGAGTGATATTGCATAAAGCAAAGTATGCTACtgagattttgaagaagtttgaaatgCTTGATTGCAATTCAGCAGTGATACCTGCATACACAAGGCTGAAGCTAGAAGTAGATGGAAGCAGTGAGACTGTGGACTCTACTATGTTCAGACAATTGTTAGGTTCCCTAAGATACTTGTGTCAAACCAGACCTGACATTAGCTATGCAGTAGGCTATGTATTTGGAGACTCGACACCATATCATGATGACGAAGTTTCGAATGTTCAAGAACGCTGTGCAAATTCGATTCATGATGACAATTCTGTTCGCTCTGCTCAATCGTTTCGCTTCGTTTCTGCATTGAATCGCTATGGTAATAATACTGGACTGcataaaaagaacaaaaagcaTTTTCAGTTGATAATAGGAATAGCTGTCGGAGTACTAGTGATTCTACTAGTCTTGTTCTTAGCAAGTTTGGTGTTATTGCATTACCTAAGGAAAAAGGCTTCTCAAAAGAGAAGTGATGAAAAAGGTATTTCAGGACGCAGCACTAAACACATAACTGGATACTCTTTCGGTGTGGATGGAAATTTAATGAATGAAGGTACTGCGTACTATATTAATCTCTCGGATTTGAAAGAAGCtacaaacaatttttcaaagaaaattggAAAAGGAAGCTTTGGATCTGTCTATTACGGGAAAATGGAAGATGGAAAAGAGATAGCAGTTAAGACTATGACCAACCCATCCAGCCATGGGAACCATCAATTTGCAACTGAGGTAGCCCTCTTATCAAGAATACATCACAGAAACTTGGTTCCGTTGATTGGATATTGTGAAAAAGAATATCAGCATATATATTCTGGTTTATGA 3657 0.3437 MAKVNIHKSQFMITQLSDHTATKSRYSPSSSPSSSPSPSSSSSSYYPSSSSYSPSSSPFSIVVALLVPFENRTAQAVAWASLKHLLVPQPMPCSDNCDWFAAVQMDKATADFEKMYSFNASAIEIDGVNNTIIMQGLEGLNYLVGETDGADPQRDPKVPGKQQSVISFTKKTTPGISIVRGCSNHMTGNKSILTDFNKCLNTRIKLANGNFIAAEGMGNVVIQRSNGKKAVIEKVLYVPGMKCNLMSVGQLLEKGFKAVFEGETLKLFDSKQRLILKIAQSQNRTFKTQVKTIEVEFLATSTEDKDSDLWHRRYGHLNFKSLSMLNSKNMVLGLPSVIAPVDTCTTCLLGKHPRSPFKSNLLMRSSEVLNVVHSDICGPIDVLSTGGNKYFITFVDEYSRMIWLYHIKAKSEAFEVFKRFKTLVEKQSDKSIKVLRTDGGGEYTSKEFENYCKDQGIIHEVTAPYTPQHNGLAERRNRSILDMARSMVKQKGLPHRFWGEAVSTAVYILNRSPTKKLIDKVPEEVWSKCKPSVTHFKVFGSLSYKHVPDARRKKLDDKSEPMVFVGYHRTGAYRLYNPTSDKIEISRDVKVLENESWDWKQKSTSKKTCEVDLDVGTSEANAPVTFVDQHQHQENHNEEDASSDEDNGRHLPVRTHRTTQIPRRLADCDMVPDNVVDNEGNIVHYAMLADTEPLDVRSALKSKVWLEAMIDELKSIEKNRTWDICKLPSDKRAIDVKWVYKLKQNPEGQGIKHKARLVAKGFLQKQGLDYDEVFSPVARHETIRLVIALACSRRWPMIHLDVKSAFLNGPLEEDVYVKQPPGFELKGMEDRVLKLNKALYGLKQAPRAWNKRIDQFLVMQSFVKCSVEYGVYVKHSDDRHMLIICLYVDDLLVTGSSPMEIENFKSQMKSEFEMTDLGKLTYFLGMELLETPKGVILHKAKYATEILKKFEMLDCNSAVIPAYTRLKLEVDGSSETVDSTMFRQLLGSLRYLCQTRPDISYAVGYVFGDSTPYHDDEVSNVQERCANSIHDDNSVRSAQSFRFVSALNRYGNNTGLHKKNKKHFQLIIGIAVGVLVILLVLFLASLVLLHYLRKKASQKRSDEKGISGRSTKHITGYSFGVDGNLMNEGTAYYINLSDLKEATNNFSKKIGKGSFGSVYYGKMEDGKEIAVKTMTNPSSHGNHQFATEVALLSRIHHRNLVPLIGYCEKEYQHIYSGL 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01380 1218 MobiDBLite consensus disorder prediction 630 653 - -
Tsu04g01380 1218 Pfam Integrase core domain 370 467 IPR001584 GO:0015074
Tsu04g01380 1218 Gene3D Phosphorylase Kinase; domain 1 1120 1215 - -
Tsu04g01380 1218 ProSiteProfiles Integrase catalytic domain profile. 352 530 IPR001584 GO:0015074
Tsu04g01380 1218 SUPERFAMILY DNA/RNA polymerases 718 1008 IPR043502 -
Tsu04g01380 1218 SUPERFAMILY Ribonuclease H-like 363 524 IPR012337 -
Tsu04g01380 1218 ProSitePatterns Protein kinases ATP-binding region signature. 1150 1172 IPR017441 GO:0005524
Tsu04g01380 1218 ProSiteProfiles Protein kinase domain profile. 1144 1218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01380 1218 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 719 962 IPR013103 -
Tsu04g01380 1218 Pfam Protein tyrosine and serine/threonine kinase 1146 1212 IPR001245 GO:0004672|GO:0006468
Tsu04g01380 1218 Gene3D - 362 552 IPR036397 GO:0003676
Tsu04g01380 1218 MobiDBLite consensus disorder prediction 631 653 - -
Tsu04g01380 1218 Pfam GAG-pre-integrase domain 296 352 IPR025724 -
Tsu04g01380 1218 SUPERFAMILY Protein kinase-like (PK-like) 1129 1211 IPR011009 -
Tsu04g01380 1218 MobiDBLite consensus disorder prediction 18 47 - -
Tsu04g01380 1218 PANTHER - 166 1007 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01380 Tsu-Chr4 14118181 14137286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01380 1106 1206 Receptor kinase-like Gene Family AT4G23160 36.893 1.02e-13 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Tsu04g01380 RVT_2 4.8e-86 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01380 - - gmx:100794549 694.886