Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01379 ATGGGTAACTGTTGTAGATCTCCGGCCGCCGTCGCTCGTGAAGATGTCAAATCAAGTTTCTCAAACCACGATCATGGAAAACGAATCAACAACGAAAAtcacaacacaaacaaaaaaactccaCCTCCGGTCACCGTACTCGGCGGCGCAGCCAAAGATAACATGGAAGAACGTTACCTCGTTGACCGTGAACTCGGTCGCGGTGAGTTCGGTGTAACATACCTCTGCATCGATCGTGATACTAGAGAGCTTCTTGCTTGTAAGAGTATTTCGAAACGGAAGCTTCGTACTGCTGTTGATATTGATGATGTGAGACGTGAAGTTGCTATTATGCGTCATTTACCTAAGAGTTCGAGTATTGTTACTCTTCGTGAAGCTTGTGAAGATGATAATGCTGTTCATCTTGTTATGGAGCTTTGTGAAGGTGGTGAACTTTTTGATCGGATTGTTGCTAGAGGTCATTATACCGAACGTGCTGCTGCCGCGGTTGCGAAAACTATCGTTGAGGTTGTTCAGCTTTGTCATAAGCATGGTGTGATTCATCGTGATCTTAAGCCGGAGAATTTCTTGTTTGCTAATAAGAAAGAGAATTCACCTCTTAAAGCTATTGATTTTGGGCTTTCTATATTCTTCAAGCCAGGTGAGAAATTCTCAGAAATTGTTGGAAGTCCATATTATATGGCTCCAGAGGTGCTCAAGCGGAACTATGGACCTGAAATAGATATATGGAGTGCAGGAGTGATACTCTATATCTTATTGTGTGGTGTTCCCCCATTTTGGGCTgAATCTGAGCAAGGAGTTGCACAGGCTATTCTTCGAGGGCTTATAGATTTCAAACGGGAACCTTGGCCCAGTATTTCTGAAAGTGCTAAAAGTCTTGTTAAGCAAATGTTAGAACCAGACCCTAAGCTTCGATTAACGGCCAAACAAGTGCTTGAGCATCCTTGGCTCCAAAATGCTAAGAAGGCTCCAAATGTTCCTCTTGGAGATGTTGTCAAGTCAAGGCTTAAGCAATTCTCAATGATGAATCGATTCAAAAGAAAAGCCCTTAGGGTCATTGCAGATTTTTTATCCAATGAAGAAGTTGAAGACATCAAAGAGTTGTTCAAGAAGATGGATACTGATAATGATGGTATTGTTTCCATTGAAGAACTAAAAGCTGGATTCCGAAAATTTGATTCTCAACTTGCTGAGTCTGAAATTCAAATGTTTATTGAAGCTGTAGATAATAATGGCAGTAAGGGGACACTAGACTACGGAGAATTTGTTGCCATTTCCCTTCATTTAAAAAGGATGGCTAATGATGAGCATCTTCACAAGGCCTTCTCCTATTTTGACAAGGATGGGAATGGATTTATTGAACCAGATGAGCTACGGACTGCCTTGATGGAAGATGGAACTGATGACTGTACAGATGTAGCAAATGATATTTTCCAAGAAGTAGACACAGACAAGGATGGACGAATCAGCTATGATGAATTTGTGTCTATGATGAAAACTGGAACGGATTGGAGAAAAGCTTCTCGGCATTACTCACGTGGGAGATTCAATAGCTTGAGCTTAAAGTTAATGAAAGACGGTTCTTTAAACTTAGGAAATGAGTAG 1605 0.4062 MGNCCRSPAAVAREDVKSSFSNHDHGKRINNENHNTNKKTPPPVTVLGGAAKDNMEERYLVDRELGRGEFGVTYLCIDRDTRELLACKSISKRKLRTAVDIDDVRREVAIMRHLPKSSSIVTLREACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVAKTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGEKFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISESAKSLVKQMLEPDPKLRLTAKQVLEHPWLQNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIADFLSNEEVEDIKELFKKMDTDNDGIVSIEELKAGFRKFDSQLAESEIQMFIEAVDNNGSKGTLDYGEFVAISLHLKRMANDEHLHKAFSYFDKDGNGFIEPDELRTALMEDGTDDCTDVANDIFQEVDTDKDGRISYDEFVSMMKTGTDWRKASRHYSRGRFNSLSLKLMKDGSLNLGNE 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01379 534 Gene3D Transferase(Phosphotransferase) domain 1 145 325 - -
Tsu04g01379 534 CDD EFh 437 499 IPR002048 GO:0005509
Tsu04g01379 534 ProSiteProfiles EF-hand calcium-binding domain profile. 360 395 IPR002048 GO:0005509
Tsu04g01379 534 Gene3D Phosphorylase Kinase; domain 1 60 144 - -
Tsu04g01379 534 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Tsu04g01379 534 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Tsu04g01379 534 CDD STKc_CAMK 58 316 - -
Tsu04g01379 534 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 13 6 515 - -
Tsu04g01379 534 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Tsu04g01379 534 Pfam EF-hand domain pair 363 425 IPR002048 GO:0005509
Tsu04g01379 534 Pfam EF-hand domain pair 436 499 IPR002048 GO:0005509
Tsu04g01379 534 MobiDBLite consensus disorder prediction 17 34 - -
Tsu04g01379 534 Pfam Protein kinase domain 61 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01379 534 MobiDBLite consensus disorder prediction 15 44 - -
Tsu04g01379 534 Gene3D - 326 502 - -
Tsu04g01379 534 SUPERFAMILY Protein kinase-like (PK-like) 35 342 IPR011009 -
Tsu04g01379 534 SUPERFAMILY EF-hand 354 512 IPR011992 -
Tsu04g01379 534 ProSitePatterns EF-hand calcium-binding domain. 373 385 IPR018247 -
Tsu04g01379 534 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Tsu04g01379 534 ProSiteProfiles Protein kinase domain profile. 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01379 534 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 515 - -
Tsu04g01379 534 ProSitePatterns Protein kinases ATP-binding region signature. 65 88 IPR017441 GO:0005524
Tsu04g01379 534 SMART serkin_6 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01379 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Tsu04g01379 534 SMART efh_1 400 429 IPR002048 GO:0005509
Tsu04g01379 534 SMART efh_1 437 465 IPR002048 GO:0005509
Tsu04g01379 534 SMART efh_1 473 501 IPR002048 GO:0005509
Tsu04g01379 534 SMART efh_1 364 392 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01379 Tsu-Chr4 14097920 14105066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01379 1 531 EF-hand Containing Proteins AT1G74740 66.916 0.0 737
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu04g01379 Pkinase 9.8e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01379 K13412 - gmx:100783922 980.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01379 04 14097920 14105066 Tsu04g01379 04 14097920 14105066 ECH