Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01374 ATGGGTTCCACTCGCTCTGATAGCTCTGCCACACACAAAGAACGCTTAAGATGGACACAACAACTCCATGATCTCTTTGTGGAGGCTGTAAATAGGCTTGGGGGCCCTGATAGGGCAACACCAAAGGGCATATTGAAGGTAATGACGGCTATTGGAATTTCAGAGTTGAGTATTTATCACGTTAAAAGCCACTTGCAGAAATACAGGATCTCCAAATTGATTCCAGAGTCCACCACAAGAGGAAAGATtgagaagaaaaatatatcaGATATACTTCCAAATTTCTGTTCTATATCTGCTCTTCAGCTAAAGGAAGTCCTTCAAATGCAAGCAGAGGTGCAAAAACGCATGGATGACAGAGTTGAGGTTCAAAAAATCTTGAAGCTGAAAATTGAAGCACAGGGAAAGTACCTAGACAGAATTGGACAAAGTAATCAAAGCAGAATAATTACAAGAAAAGCATGCAAACCATTTGTTGTTAAAGCTACACCTCTTCCCTCTCTTTCTGAGGAATCTGAATCCTTAAAAACACAATCTGAGGAAGAACATCAAGCAGCCAAAAAGCTAAAGATAATAGATAATGATGTTTTTCCTACAGGTTTTGAACTAGGACCATCATCAACAATCTCAGAATTCTGCAATCAAACTTGGAACAACCTTTCTTGGATTCAGCTGGCTGAAGCAACATGTCAATCACCTTTGGTGCCTAGTTTCTTATTATAA 723 0.3873 MGSTRSDSSATHKERLRWTQQLHDLFVEAVNRLGGPDRATPKGILKVMTAIGISELSIYHVKSHLQKYRISKLIPESTTRGKIEKKNISDILPNFCSISALQLKEVLQMQAEVQKRMDDRVEVQKILKLKIEAQGKYLDRIGQSNQSRIITRKACKPFVVKATPLPSLSEESESLKTQSEEEHQAAKKLKIIDNDVFPTGFELGPSSTISEFCNQTWNNLSWIQLAEATCQSPLVPSFLL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01374 240 Pfam MYB-CC type transfactor, LHEQLE motif 102 145 IPR025756 -
Tsu04g01374 240 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 7 187 IPR044848 GO:0003700
Tsu04g01374 240 Gene3D - 12 73 - -
Tsu04g01374 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 73 IPR017930 -
Tsu04g01374 240 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 7 187 - -
Tsu04g01374 240 SUPERFAMILY Homeodomain-like 12 70 IPR009057 -
Tsu04g01374 240 Pfam Myb-like DNA-binding domain 16 69 IPR001005 -
Tsu04g01374 240 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 13 71 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01374 Tsu-Chr4 14048435 14051013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01374 1 138 G2-like Transcription Factor Family AT4G28610 48.966 5.61e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu04g01374 Myb_DNA-binding 3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01374 - - pvu:PHAVU_008G103100g 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01374 04 14048435 14051013 Tsu04g01374 04 14048435 14051013 ECH