Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01373 ATGGAAATGGCTTCTAGCCCTCGTACCGTTGAAGAGATCTTCAAAGATTACGATGCTCGTAGAACCGCCGTTGTTCGTGCTCTCACTCATGATGTTGATGAATTTTACGGACTTTGTGATCCAGATAAGGATAATTTGTGCCTTTATGGACATGGGAATGGAAGCTGGGAAGTAACTCTGCCGGCGGAGGAAGTTCCGCCGGAGCTTCCTGAGCCGGCTCTTGGAATCAATTTTGCTAGAGATGGCATGAACCGAAAGGACTGGCTTTCTCTTGTTGCTGTGCACAGTGATTCCTGGTTGCTTTCGGTTGCGTTTTATCTTGGAGCTCGTCTCAACCGGAATGAAAGGAAACGATTGTTTAGTTTGATCAACGATCTTCCCACCGTTTTCGAACTTGTGTCGGACAGGAAACCAGTTAAGGACAACAAGCCAGCAGCGGACAGTGGAAGCAAATCCCGAGGAAGCACCAAGAGATCCAATGATGGGCAAGTCAAAAGCAATCCAAAGTTTGCTGCGGATGATGGTTATGAGGAGGAGGAAGACGAGCACAGCGAAACACTTTGCGGTAGCTGCGGCGGAAATTACAACGCGGACGAGTTTTGGATTGGCTGTGATATATGTGAGAGGTGGTACCACGGAAAATGTGTGAAGATCACTCCTGCGAAGGCCGAGAGCATAAAGCAATACAAGTGCCCTCAGTGCAGCATCAGGCGGAACAGACCTTAG 726 0.4862 MEMASSPRTVEEIFKDYDARRTAVVRALTHDVDEFYGLCDPDKDNLCLYGHGNGSWEVTLPAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFELVSDRKPVKDNKPAADSGSKSRGSTKRSNDGQVKSNPKFAADDGYEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPQCSIRRNRP 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01373 241 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 2 240 - -
Tsu04g01373 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Tsu04g01373 241 Pfam PHD-finger 188 235 IPR019787 -
Tsu04g01373 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Tsu04g01373 241 CDD PHD_AL_plant 187 237 IPR044104 -
Tsu04g01373 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 235 IPR013083 -
Tsu04g01373 241 MobiDBLite consensus disorder prediction 139 176 - -
Tsu04g01373 241 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Tsu04g01373 241 PANTHER CPG BINDING PROTEIN 2 240 IPR045104 GO:0006355|GO:0042393
Tsu04g01373 241 SMART PHD_3 187 235 IPR001965 -
Tsu04g01373 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Tsu04g01373 241 MobiDBLite consensus disorder prediction 148 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01373 Tsu-Chr4 14044217 14047319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01373 4 240 Alfin-like Transcription Factor Family AT5G05610 74.684 2.49e-118 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Tsu04g01373 Alfin 2.4e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01373 - - gmx:100782478 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01373 04 14044217 14047319 Tsu04g01373 04 14044217 14047319 ECH