Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01372 ATGCCACAACCACATTCTTCCACCGCCATTGCTTCTTCTTCCACCTCCAACGCTGAAACTTctcaatcaaatcaaaattctaTAGTATCCAACGCCGAAACTTCTCAATTAAACCAAAATGCTCAAGTACCGGAGAATCGTCCACGTCAGTCTCGCCGCGTCACCATCACCTACGGGAGATTCAACCGGAGTATTAGTATCACCGATGACTCTGCCATTGTTAGGGATGATAAATGGTCCTGTTTGGCCGTTATCTTCAGCCTTTGGTTCTTCGTTGCGGTGACAATGATAATGGGAGTTTATGGGTCGATGAGTGTGACCCTAGGTCCATGTTCTTCGATTGTTTTTCATCCAAACCCTGTGTTTGTGCAATATGTGAAGGTAGAAAACTTACAGGCAAATCCAGGAGTCATTCTTTATGGTACATATCAATATCCGTCTCTTGACGTTGTTTCCACATGGAGAGAAACTTATAATATATCTGTTCCTTATGGCTCTGAGAAGGAATGGAAATATTATCTGAATAGAGGGTCTGAAGTGAATATTTCGTATAGCTTGAGCTCTGAGAGCTCCTCCATTTATCTTGTAATTGCCGAAGGAGCTGAAAGCCTCTCAGTGTGGCTGGCTGACCCAACATATCCCAATACAACTCTGTCTTGGAAcatgatccatggAACTGGTATGATTACTCAGGAAATATTCAGGTCATCCAGCTATTATGTGGCATTGGGTAATTTGGAGGAGGAAGAGGTGGAGGTTGAATTAAACCTCACTGTAAAGGCCATCTTGCATAATACAACAAATGCTTACTACAAATGTGCCCTGACTAGTAGTCCATGTAGTCTGAATATTTTCTTTCCTGATGGAAACGCAGCTGTCTTAGTTTCTCCTGCTCCACAACAGAACACATCCAATGAAGATTGGTACGTCGAACTGTCTTATGGGCCAAGATGGCTTACATATATTTTTGGCATAGGTGGACTGACTGTGATTATGTTTTGGGCCTTCAACTTCTTGAACAAGCTTCAGAGTGCCCATGATGATCGAATAGGATCCAGACCTGAAGGAACGAGTCCTGATCGAGCCCCTTTGCTTTCTCGGAAAGATGATGATCTTTCAAGTTGGGGTTCATCATATGATTCCTTACCACAAGATGAGGAGGATCTTGATTTTCTCGCTGGAGGTTCTACTGATGGGAAATGTTTAGGTGATGGTGAAACCAGTAATAATACTCGGCGTCTTTGTGCAATTTGTTTTGATGCTCCACGGGACTGCTTCTTCCTTCCATGTGGGCACTGTGTGGCTTGTTTTGAATGTGGAACTAGGATAGTTGAGGCAGCTGGTACATGTCCTGTTTGTCGTAGGAACATGAAGAAGGTGAGGAAAATTTTTACTGTATGA 1401 0.4226 MPQPHSSTAIASSSTSNAETSQSNQNSIVSNAETSQLNQNAQVPENRPRQSRRVTITYGRFNRSISITDDSAIVRDDKWSCLAVIFSLWFFVAVTMIMGVYGSMSVTLGPCSSIVFHPNPVFVQYVKVENLQANPGVILYGTYQYPSLDVVSTWRETYNISVPYGSEKEWKYYLNRGSEVNISYSLSSESSSIYLVIAEGAESLSVWLADPTYPNTTLSWNMIHGTGMITQEIFRSSSYYVALGNLEEEEVEVELNLTVKAILHNTTNAYYKCALTSSPCSLNIFFPDGNAAVLVSPAPQQNTSNEDWYVELSYGPRWLTYIFGIGGLTVIMFWAFNFLNKLQSAHDDRIGSRPEGTSPDRAPLLSRKDDDLSSWGSSYDSLPQDEEDLDFLAGGSTDGKCLGDGETSNNTRRLCAICFDAPRDCFFLPCGHCVACFECGTRIVEAAGTCPVCRRNMKKVRKIFTV 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01372 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 466 IPR013083 -
Tsu04g01372 466 Pfam Zinc finger, C3HC4 type (RING finger) 412 460 - -
Tsu04g01372 466 MobiDBLite consensus disorder prediction 1 30 - -
Tsu04g01372 466 Pfam Domain of unknown function (DUF4793) 228 334 IPR032010 -
Tsu04g01372 466 MobiDBLite consensus disorder prediction 348 383 - -
Tsu04g01372 466 Pfam Domain of unknown function (DUF4792) 138 204 IPR032008 -
Tsu04g01372 466 SUPERFAMILY RING/U-box 414 460 - -
Tsu04g01372 466 ProSiteProfiles Zinc finger RING-type profile. 415 454 IPR001841 -
Tsu04g01372 466 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 6 466 - -
Tsu04g01372 466 SMART ring_2 415 453 IPR001841 -
Tsu04g01372 466 PANTHER OS05G0521000 PROTEIN 6 466 IPR044586 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01372 Tsu-Chr4 14031114 14037733 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01372 388 463 C3H Transcription Factor Family AT3G06140 30.263 7.03e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01372 - - gmx:100791057 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01372 04 14031114 14037733 Tsu04g01372 04 14031114 14037733 ECH