Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01366 ATGGCTTCTCGCCAAATAACACAAGAACAACAACCATGGCTTTTGGAGAATGGTGATCCAAAACGCTTGACAAAGGAAGCAAGACATGGACATGGTCGGAGCCGAACTGCGCATGGCATGTCTGCGACTGCCTTGCGCAAGAAATCCGACCATACTCTTGTGTCGAGGGTTCGATGTGCTGCCCTTCGGAATTTCTTGGTTAACATCCAAGAAGTTATTCTTGGTACCAAGCTGTCCATTCTCTTTCCTGCCATTCCTGCTGCCATCATTGCTCATTACTTAGGCTTAGGACAAtCGTGGGTTTTCATACTGAGTTTGCTTGGCCTCACACCACTTGCTGAACGTGTGAGCTTCCTCACAGAACAAATTGCTGTTTTCACTGGTCCTACAgTTGGAGGACTTCTTAATGCAACATGTGGGAATATTACTGAGTTGATTATAGCAATATTTGCTCTTAAAAGCAATCAAATTGCTGTTGTCAAGTATTCTCTTCTAGGTTCAATCCTTTCAAaccttcttcttgttcttggaACCTCTCTTCTTTGTGGTGGAATTGCAAACATTGGAGATGAGCAAAAATATGACAGAAGACAAGCAGATATGAACTCACTCATGCTACTATTGGCATTGTTATGTCATTTGCTTCCACTGCTATTCACATACAGTGCTGCATCAGCTGAGCTCACAGCGGAACCTTCACTTTATTTGTCAAGAGCCGCTAGCATCGTGATGTTGGGCGCATATTTTGCTTACTTGATCTTTCAGCTATGGACACATAGGCAATTATTTGAAGCTGAAGAAGAAGGTGAAGAAGGTGAGAACAATTCAGCAGAAGAAGAGGCTGTGATTGGATTCTGGAGTGCATTTGCTTGGTTGGCTGGAATGACTGTTTTCATTGCTTTGTTGTCTGAATATGTGGTGGATACAATTCAGGATGCATCAGATTCTTGGGGTTTATCTGTCAGTTTCCTCAGCATAATCTTGCTACCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCAATCATTTTTGCTTTCAAGAACAAGCTGGACATTTCCTTAGGTGTTGCATTGGGCTCTGCTACTCAAATTGCAATGTTTGTGGTTCCTCTCTGTGTAATTGTTGCTTGGATAATGGGTGTGAAAATGGACTTGAACTTCAGCCTCCTTGAGACAGGTTCTCTTGCTTTGGCAATTATTGTCACTGCCTTCACTTTGCAGGATGGTACTTCTCACTACATGAAAGGCCTTATTCTCCTACTTTGCTACTTTGTTATtggtgcttgtttctttgtGCAAAGAACACCCaACCAAAATGATGTTCCTAACTTCACTCTTAAATCAGTCACTGATTCAGTTTTAAGCACCTAA 1371 0.4121 MASRQITQEQQPWLLENGDPKRLTKEARHGHGRSRTAHGMSATALRKKSDHTLVSRVRCAALRNFLVNIQEVILGTKLSILFPAIPAAIIAHYLGLGQSWVFILSLLGLTPLAERVSFLTEQIAVFTGPTVGGLLNATCGNITELIIAIFALKSNQIAVVKYSLLGSILSNLLLVLGTSLLCGGIANIGDEQKYDRRQADMNSLMLLLALLCHLLPLLFTYSAASAELTAEPSLYLSRAASIVMLGAYFAYLIFQLWTHRQLFEAEEEGEEGENNSAEEEAVIGFWSAFAWLAGMTVFIALLSEYVVDTIQDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAMFVVPLCVIVAWIMGVKMDLNFSLLETGSLALAIIVTAFTLQDGTSHYMKGLILLLCYFVIGACFFVQRTPNQNDVPNFTLKSVTDSVLST 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01366 456 Coils Coil 260 280 - -
Tsu04g01366 456 TIGRFAM cax: calcium/proton exchanger 84 431 IPR004798 GO:0006816|GO:0015369
Tsu04g01366 456 Gene3D - 129 285 IPR044880 -
Tsu04g01366 456 MobiDBLite consensus disorder prediction 17 42 - -
Tsu04g01366 456 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 8 441 - -
Tsu04g01366 456 TIGRFAM caca2: calcium/proton exchanger 64 431 - -
Tsu04g01366 456 Pfam Sodium/calcium exchanger protein 100 257 IPR004837 GO:0016021|GO:0055085
Tsu04g01366 456 Pfam Sodium/calcium exchanger protein 288 426 IPR004837 GO:0016021|GO:0055085
Tsu04g01366 456 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 8 441 IPR004713 GO:0006812|GO:0008324|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01366 Tsu-Chr4 13880529 13897344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01366 11 437 Antiporters AT2G38170 68.445 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01366 K07300 - gmx:100779440 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01366 04 13880529 13897344 Tsu04g01366 04 13880529 13897344 ECH
Tsu04g01366 04 13880529 13897344 Tsu06g00410 06 3507380 3511505 PCT