Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01364 ATGGCAACTTCAAAGGTTGCAAATGGAAATGGTTTAAGTGAGACCAAAGGAAAGACTATCACTTGCAAAGCCGCGGTGGCACATGGTCCGGGAGAACCCTTTGTCGTGGAGCAAATTCTTGTGCATCCTCCTGAAAAAATGGAGGTTCGAATCAAGATCCTCTATACTTCTATTTGTCACACTGATCTCAGCGGTTGGAAAGGCGAGTGTGAACCTCAACGTGCTTATCCTCGGATTTTTGGCCATGAAGCTTCTGGGGTTGTGGAGAGTATTGGACAAGGAGTGAGTGACATAAAAGAAAAGGACATAGTTGTCCTAATATTCAATGGTGAGTGTGGTGAGTGTACCTATTGCAAGTGTGAGAAAACTAATATGTGTGAGAAGTTTGGGGTAGACCCAATGAAGAGGCTAATGTGTGATGGTACAAGTAGATTTTCAACAATTGATGGCAGACCCATTTTCCATTTCTTGAACACTTCAACTTTCACGGAGTATACAGTGGTTGATTCAGGTTGTGTTGTTAAAGTCAACCCTCAAGACAATCTTAGCCTAAAACACCTCACCATGCTTAGTTGTGGAGTTTCCACAGgAATTGGAGCTGCTTGGAATACTGCTAATGTGCATGCTGGTTCATCTGTAGCAGTGTTTGGTTTAGGTGCAGTTGGGCTTGCAGTTGCAGAAGGGGCACGAGCTAGAGGTGTTTCCAAAATAATAGGTGTGGATATCAACCCAGACAAATTCATCACAGCCAAATCAATGGGAATCACAGACCTCATAAATCCAACTGATGAAGAGAAGCCAGTATATGAGAGAATCAGAGAAATGACTGGTGGAGGAGGTGTTGACTACAGTTTTGAATGTACAGGAAACTTGAATGTCCTAAGAGATGCCTTCTTGTCTGTTCATGAGGGTTGGGGATTGACTGTACTATTGGGAATTCATTCATCGCCAAAGTTGCTACCCATTCACCCGATGGAGCTCTTTGATGGGCGCAGAATCGAAGGATCAGTCTTTGGAGGCTTCAAAGGCAAAAGCCAGTTGCCTAATCTTGCCACAGAATGCATGCAAGGGgAGATAAAGCTGGAAAAGTTCATTACTCACGAACTTCCCTTTGAGGAGATAAACAAAGCCTTTGACCTTTTGATTGACGGGAAATCGCTGAGATGTCTTCTGCACCTCTAA 1182 0.4357 MATSKVANGNGLSETKGKTITCKAAVAHGPGEPFVVEQILVHPPEKMEVRIKILYTSICHTDLSGWKGECEPQRAYPRIFGHEASGVVESIGQGVSDIKEKDIVVLIFNGECGECTYCKCEKTNMCEKFGVDPMKRLMCDGTSRFSTIDGRPIFHFLNTSTFTEYTVVDSGCVVKVNPQDNLSLKHLTMLSCGVSTGIGAAWNTANVHAGSSVAVFGLGAVGLAVAEGARARGVSKIIGVDINPDKFITAKSMGITDLINPTDEEKPVYERIREMTGGGGVDYSFECTGNLNVLRDAFLSVHEGWGLTVLLGIHSSPKLLPIHPMELFDGRRIEGSVFGGFKGKSQLPNLATECMQGEIKLEKFITHELPFEEINKAFDLLIDGKSLRCLLHL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01364 393 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 182 357 IPR036291 -
Tsu04g01364 393 Pfam Zinc-binding dehydrogenase 220 340 IPR013149 -
Tsu04g01364 393 PANTHER ALCOHOL DEHYDROGENASE 15 392 - -
Tsu04g01364 393 Pfam Alcohol dehydrogenase GroES-like domain 48 174 IPR013154 -
Tsu04g01364 393 Gene3D - 26 389 - -
Tsu04g01364 393 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 81 95 IPR002328 GO:0008270|GO:0016491
Tsu04g01364 393 SUPERFAMILY GroES-like 343 392 IPR011032 -
Tsu04g01364 393 PANTHER ALCOHOL DEHYDROGENASE-LIKE 3 15 392 - -
Tsu04g01364 393 Gene3D - 197 336 - -
Tsu04g01364 393 SUPERFAMILY GroES-like 15 216 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01364 Tsu-Chr4 13860345 13868905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01364 48 382 Monolignol Biosynthesis Gene Families AT2G21890 26.036 1.84e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01364 K00001 - gmx:100819896 602.438