Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01360 ATGGGGTTTGTTctgaaaagaaagaagaaggaattagaagaaaaagggaaaaaaattattgaagaagctaaattagaagaaaaaggaaaattagaGATCATGCGCAAGTCTTACAAAGATTCTCTCAAAACTCTTGAAGCTGACATCCATTTTGCCAATACACTAGCTTCTGGTTATCCAAGTGATCCGGATGGCGCCTGCCTTCAGATGAGATTGTCTTATAGCCCAGCTGCCCATTTATTCCTTTTTCTTGTTCAGTGGACCGACTGTCAACTTGCCGGAGCCTTAGGATTGCTTAAAATTCTTATATACAAGGCATACAAGGATGGGAACACAACCATGTCTATTTATGAAAGAAAAGCTAGTTTGAAGGAGTTTTATAGTGTGGTGTTTCCGTCTTTATTGCAACTTCACAGTGGAATCACTGATGTTGAAGATAGGAAACAAAAACATCTGTGTGCTACTAGATACAAACCTAAAGATTTGGTAGACAAAGGAAAGAGCTCTGAAATTGATACACAGAAAGAAGAAGAGTGTGATATTTGCATGGAGATGAACACCATTGTTGTATTGCCTAATTGCAATCATTCAATGTGTATGAAATGTTACCGAGACTGGCATGGAAGGTCTGAATCTTGCCCTTTTTGTCGAGACAGTCTAAAAAGAGTGAACTCATGTGATCTTTGGATGTACACGAGCAGCAATGAGATAGATGATCTTGCTTCAATCAATAAGGAAAATTTAAAAAGACTATTTATGTACATAGAAAAGTTACCTCTTGTTCCTAGACCATATATTCACATGATATCACCACAACTTGTGGTTGCCTCTTAG 834 0.3477 MGFVLKRKKKELEEKGKKIIEEAKLEEKGKLEIMRKSYKDSLKTLEADIHFANTLASGYPSDPDGACLQMRLSYSPAAHLFLFLVQWTDCQLAGALGLLKILIYKAYKDGNTTMSIYERKASLKEFYSVVFPSLLQLHSGITDVEDRKQKHLCATRYKPKDLVDKGKSSEIDTQKEEECDICMEMNTIVVLPNCNHSMCMKCYRDWHGRSESCPFCRDSLKRVNSCDLWMYTSSNEIDDLASINKENLKRLFMYIEKLPLVPRPYIHMISPQLVVAS 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01360 277 SUPERFAMILY RING/U-box 169 222 - -
Tsu04g01360 277 Pfam Zinc finger, C3HC4 type (RING finger) 176 222 - -
Tsu04g01360 277 PANTHER RING FINGER PROTEIN 41, 151 32 276 - -
Tsu04g01360 277 ProSitePatterns Zinc finger RING-type signature. 194 203 IPR017907 -
Tsu04g01360 277 SMART ring_2 179 216 IPR001841 -
Tsu04g01360 277 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 32 276 - -
Tsu04g01360 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 227 IPR013083 -
Tsu04g01360 277 ProSiteProfiles Zinc finger RING-type profile. 179 217 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01360 Tsu-Chr4 13829596 13833252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01360 127 221 C3H Transcription Factor Family AT5G01960 29.000 5.36e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01360 K25840 - gmx:100814293 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01360 04 13829596 13833252 Tsu04g01360 04 13829596 13833252 ECH
Tsu04g01360 04 13829596 13833252 Tsu06g00377 06 3202069 3211290 PCT