Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01359 ATGACAAAGGGCAAGGGAACAGGAAAGACTTCAAGGGAAGTATTGAAACCAGTTGATGACCGAAAGGTAGGAAAGCGAAAGGCAGCTTCTAAACCTGAGAAGAGCGCACCAAAGACGACTAAAAAGGATAAGAAGGCCAAGAAAGATCCCAACAAACCAAAAAGACCTCCAAGCGCTTTCTTTGTCTTCCTTGAGGATTTCAGAAAGACTTTTAAGGCAGAAAATCCTAATGTGAAGGCTGTGTCAGCTGTCGGAAAAGCTGGAGGAGAAAAATGGAAATCTTTGACTAAGGCCgaaaaagctCCCTATGAAGCCAAGGCTGCAAAAAGGAAAGTTGAGtatgaaaaacttatgaacgcTTATAATAACAAGCCAAGTTCAGCAGACGATGAAGATGAGGAATCAGACAAGTCCAAATCTGAAGTTAATAATGAAGATGAAGCAAGTGGAGAGGACGACCACCAAGATGATGAGGATGAAGATGACGACGacgaggatgatgatgatgaagatgatgattga 522 0.3812 MTKGKGTGKTSREVLKPVDDRKVGKRKAASKPEKSAPKTTKKDKKAKKDPNKPKRPPSAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKVEYEKLMNAYNNKPSSADDEDEESDKSKSEVNNEDEASGEDDHQDDEDEDDDDEDDDDEDDD 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01359 173 MobiDBLite consensus disorder prediction 146 173 - -
Tsu04g01359 173 SMART hmgende2 52 123 IPR009071 -
Tsu04g01359 173 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 53 122 IPR009071 -
Tsu04g01359 173 PANTHER HIGH MOBILITY GROUP B PROTEIN 1 2 162 - -
Tsu04g01359 173 CDD HMG-box 55 118 - -
Tsu04g01359 173 MobiDBLite consensus disorder prediction 85 107 - -
Tsu04g01359 173 Pfam HMG (high mobility group) box 53 122 IPR009071 -
Tsu04g01359 173 MobiDBLite consensus disorder prediction 9 54 - -
Tsu04g01359 173 MobiDBLite consensus disorder prediction 92 107 - -
Tsu04g01359 173 SUPERFAMILY HMG-box 44 127 IPR036910 -
Tsu04g01359 173 MobiDBLite consensus disorder prediction 1 58 - -
Tsu04g01359 173 MobiDBLite consensus disorder prediction 119 173 - -
Tsu04g01359 173 MobiDBLite consensus disorder prediction 126 145 - -
Tsu04g01359 173 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 2 162 IPR031061 -
Tsu04g01359 173 Gene3D High mobility group box domain 36 138 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01359 Tsu-Chr4 13824357 13827642 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Tsu04g01359 HMG_box 2.7e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01359 K25507 - gmx:100499704 189.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01359 04 13824357 13827642 Tsu04g01359 04 13824357 13827642 ECH