Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01357 ATGGTGATGAAGGAAAGAGATGAAGAGCTTGCTTTGTTTCTTGAGATGaggaggagagagaaagagaatgaaAAGAGCAATCTTCTCCTTCTTGAAAACTCTGATGAACTTGATTTTTCAAATTTggAATCTAATCATGAGAACTCTATGATTTCAAAGATGGTATCTTCAGTTCCACCAAAGAAGACTGTGGTTGAAGAGTTCTTGAATTCAGAGAATGATAAGTCTGATTATGAATGGCTTCTTACTCCACCTGATGCACCTCTTTTTCCTACTTTAGATAAGGAGTCACAAATATCATTGAAGAGTGAAACGGAGACTCGCAATTCTCGTCCTACAGCTCTAAAACTACGGGTATCTAATATCCAAACAGAACCTAATTCAAGAAACAATGTAGTTTCTAAGAATCATACAACAATGCCTGGTAATGGTAGTAAGAGAATTTCATCGTCACGAGGTCCATCTCCATCTCCAGCTACTTCAAGATCTTCAACACCATCTGGAAGGCCAACATTACCTTCAACAACCAAATCCTCTAGACCGTCTACGCCTACGTCGCGATCCACGTTAACTTCTGCGAAATCGACAGCTCCACCGGTGAGATCGTCAACTCCTACTAGATCCACTTCGAGGGCCTCAACGCCTACTTCAAGGCCTTCCGTGACAGCTCCTAAGACGACTCAAAGATCAGCAACTCCGAATATTCGGTCATCAACTCCGTCGAGGACGTTTGGGGTATCTGCTCCTCCTACTCGACCTTCATCAGCATCAAAAGCACGCCCTGTTGTTGCTAACAATCCGGTGCAATCACGTGGTATCTCTCCAGCAGTAAAATCTAGACCTTGGGAACCCTCACAAATGCCTGGCTTTACTCACGACGCTCCTCCAAATTTGAAAACATCATTGCCAGAAAGACCAACTTCAGTCACTAGAAGTAGGCCTGGAGTATCAAATCCGAGATCAGCTTCTGTTGAGGCCACTAGCAATGCAAAATCTAGAAGGTCATCAATCACACCTTCAAAAGGACGTGGTTCAACCGGGCTTCCTCACAATAATCATAGCTCCATGCATGCTTTGAGTAGAGCTCGTTTCACCGATAGTGATGAAGAAAGTCCTGTTGTAATCGGGACAAAAATGGTCGAAAGAGTTGTGAACATGAGAAAACTTGCACCTCCAAAGCACAACGACCCTTCTGCCAACAACAATTCTTATGGAAAATCTTCAACTGGTAGCTCTGGATTCGGAACTACGCTTTCAAAGAAGTCTTTAGATATGGCAATGAGGCATATGGACATAAGACGAAGCATTCAGGGTAATTTGCGGCCACATGTGACAAGCATTCCAGCTTCATCTATGTACAGTGTGAGATCAAGTAGTTCATCAAAGAGCAGGACAGTGAGTTTTTCTGATTCGCCACATGCCACACGCAGCACTGCTAGCTCTGAACGAAGTGTAAATAATAACTCCATATCTTATGGAAGGAAAGGTGAACCTGCTGATGAGACACATGAACAAGTGAAGGAAACTAAAAGCTTTAGCTATAGCTCATTGAGATCTGCTACAGGGGATTTTCATCCTTCATGCAAAATTGGTGGAGGAGGCTATGGAGTTGTCTACAAAGGTGTTTTAAGGGATGGTACTCAAGTTGCTATCAAGTGTCTTTCTGTTGAGTCTAAACAAGGAACTCATGAATTTATGACAGAAATTGATATGATATCAAATATACAACATCCAAATCTTGTTAAACTGATCGGCTTCTGTGTTGAGGGTAATCATCGAATATTGGTATACGAGTTTCTCGAGAACAATAGTCTCGCAAGTTCTTTACTAGGTTCAAAAAGTAAATGTGTTCCTCTGGATTGGCCAAAGCGGGTTGCTATTTGCCGCGGTACAGCATCTGGTCTAAGTTTTCTTCATGAAGATGCTCAGCCAAACATTGTACATAGAGATATCAAAGCAAGCAATATATTGTTAGATGAGAATTTCAATCCAAAAATTGGTGATTTTGGTCTTGCAAAACTCTTTCCTGACAATGTCACGCATGTTAGCACCCGAGTTGCAGGAACAATGGGATATCTTGCGCCAGAATATGCGCTTCTAAGACAGCTTACAAAGAAGGCAGATGTATACAGTTTTGGGATTCTGATGCTTGAAATAATCAGTGGTAAAAGCAGTAGCAAAGCTGCATTTGGAGACAATATTTTGGTTCTTGTCGAATGGGCATGGAAGCTAAAAGAAGAAAACCGGCTTCTAgaacttgttgattcagaaaTAACCGACTATGACGAGAACGAGGTGTATCGTTTCCTTGTAGTTGCTCTATTTTGCACTCAATCAACAGCTCAACATAGACCAACAATGAAACAAGTACTACAAATGCTTTCGAAACAAGTTCATCTTAATGAGAAGGCATTAACTGAGCCTGGTATATACAGATGGAATACATCTGTAAAGACGAGCGGTTCTTCTAACGAGACAACATTGCCGTCGTCTCAAGTGATCAAGcacaaaaattatgattttcaaCATCAAACCTCGACGCAATTTAGTGGTACCGATATTGTGACAGAGGTGTTTCCTAGATGA 2586 0.4072 MVMKERDEELALFLEMRRREKENEKSNLLLLENSDELDFSNLESNHENSMISKMVSSVPPKKTVVEEFLNSENDKSDYEWLLTPPDAPLFPTLDKESQISLKSETETRNSRPTALKLRVSNIQTEPNSRNNVVSKNHTTMPGNGSKRISSSRGPSPSPATSRSSTPSGRPTLPSTTKSSRPSTPTSRSTLTSAKSTAPPVRSSTPTRSTSRASTPTSRPSVTAPKTTQRSATPNIRSSTPSRTFGVSAPPTRPSSASKARPVVANNPVQSRGISPAVKSRPWEPSQMPGFTHDAPPNLKTSLPERPTSVTRSRPGVSNPRSASVEATSNAKSRRSSITPSKGRGSTGLPHNNHSSMHALSRARFTDSDEESPVVIGTKMVERVVNMRKLAPPKHNDPSANNNSYGKSSTGSSGFGTTLSKKSLDMAMRHMDIRRSIQGNLRPHVTSIPASSMYSVRSSSSSKSRTVSFSDSPHATRSTASSERSVNNNSISYGRKGEPADETHEQVKETKSFSYSSLRSATGDFHPSCKIGGGGYGVVYKGVLRDGTQVAIKCLSVESKQGTHEFMTEIDMISNIQHPNLVKLIGFCVEGNHRILVYEFLENNSLASSLLGSKSKCVPLDWPKRVAICRGTASGLSFLHEDAQPNIVHRDIKASNILLDENFNPKIGDFGLAKLFPDNVTHVSTRVAGTMGYLAPEYALLRQLTKKADVYSFGILMLEIISGKSSSKAAFGDNILVLVEWAWKLKEENRLLELVDSEITDYDENEVYRFLVVALFCTQSTAQHRPTMKQVLQMLSKQVHLNEKALTEPGIYRWNTSVKTSGSSNETTLPSSQVIKHKNYDFQHQTSTQFSGTDIVTEVFPR 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01357 861 MobiDBLite consensus disorder prediction 451 493 - -
Tsu04g01357 861 Pfam Protein kinase domain 527 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01357 861 MobiDBLite consensus disorder prediction 119 273 - -
Tsu04g01357 861 MobiDBLite consensus disorder prediction 395 418 - -
Tsu04g01357 861 PANTHER GASTRIC MUCIN-LIKE PROTEIN 1 499 - -
Tsu04g01357 861 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Tsu04g01357 861 ProSitePatterns Protein kinases ATP-binding region signature. 530 552 IPR017441 GO:0005524
Tsu04g01357 861 MobiDBLite consensus disorder prediction 301 361 - -
Tsu04g01357 861 SMART serkin_6 524 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01357 861 Gene3D Phosphorylase Kinase; domain 1 495 599 - -
Tsu04g01357 861 ProSiteProfiles Protein kinase domain profile. 524 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01357 861 PANTHER GPI-ANCHORED PROTEIN PB15E9.01C-RELATED 1 499 - -
Tsu04g01357 861 MobiDBLite consensus disorder prediction 451 511 - -
Tsu04g01357 861 MobiDBLite consensus disorder prediction 389 418 - -
Tsu04g01357 861 SUPERFAMILY Protein kinase-like (PK-like) 504 794 IPR011009 -
Tsu04g01357 861 MobiDBLite consensus disorder prediction 119 370 - -
Tsu04g01357 861 CDD STKc_IRAK 543 796 - -
Tsu04g01357 861 Gene3D Transferase(Phosphotransferase) domain 1 600 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01357 Tsu-Chr4 13772401 13781240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01357 511 809 Receptor kinase-like Gene Family AT1G56120 52.843 1.15e-99 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu04g01357 Pkinase 3.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01357 - - aprc:113863389 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01357 04 13772401 13781240 Tsu04g01357 04 13772401 13781240 ECH