Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01352 ATGTTTAGGAAAGAGTACTTGAGTATTTACCAAACTTTGGAACGTCTGCAATATATTCTGAACGGTTTGTATCCTCCGAAAGTTATGCTTAAGAGTGGCATTGCACCGGTAGAAAATTGGTTAACTTTTCCGGATATGGGGCATATCCTTGCAACTGCCTACAACCGCGTTGTTGTTGAATTGACTACACATAAGATTGGCCATTCTGAAACATTTTTCCCATTGCACGGTCGTCCACCATTGGATCCATCTGCACGCATGATGTGTATTGGTATGGTTCCTAATCATTGTGTGTATGTCAAATTGAAGGACGGGTGTCCACTGCCTCCAACTTACAAGGAATGGAAAAATAATCGGGTGCCAGAGGCTGAGACTTGGGAGGATACCTTTTTGGATCGGAGACGAATAAAGATGATCCCATCCATGTGGAATGATAGtACTGATGCACTTTATTTTCTGGTTTATCTCATGGAACTTAATCCACGCCGGGACATCTGCGAATACCTCGAAGCATCAGCGAAGATGCAGCGAACGAAGTCAGAGAGGAAAAGGCCATTAGCGAAATCGCAGCGAATCAGTGGCGAATGTGCTCGCTGCAGCGAACCAATAGCGAAGCATCAGCGAACGAAGTCAGAGAGGAAAAGCGAAATGGCGAGGGTTTTTGAGTTTATCAAGGATATCACTGACCGTAAGGATCTATGGAAAATAGCTGTTAAAGTGAAAGACAAATGGAATGCTACCAAAGAGGGAAAAGACTTCTTTCAAATGGTTGTTGTGAATTCAAAGGGAGATGATATATTTGTATTAGTTCCAAATGAGTTGAAacagaaatttgaaaatgagtTTCCTATCACTGTCAACAACACTTACACTATGCAAAACTTTCAAGTTACAAAGAATGATGATCAGTTCAAACCTTCACATCATGACTTCAAATTGAGGTTTACTGGTGGTACTTTAGTGGAAGATGTGAATGTTCATCAAATTGCTGATCCTGTTGCAAAGTTTAAATCTTTTGGTGACATTCTTAATGGAGATTTTCGTGAAGATTACTTATATGATGTCATTGGCCTGATTGATGAAGTTGGTTATCAACAACCTCATCCTGGTAATAGGAAAGTCCAAGTGAAAATTATTCTTCGAGATCTAGGCAACAATGTGATTAATTGCACCCTTTGGGAAAACTATGCCCTCAAATTCTTCAATGTTCAGACCAAAGCTGGTGATGGTCCAACTATTGTCTTCATGAAATATGCCAAAATCAAACATGCAGGCAAATATGCTTTGACAATTTCAAACACATGGACTACCACTCAACTTTTCATCAATGATGAAGTTCCAGAGATTATTGAATTCAAAAAAAGTTTAGTTGCTGGTATTGAAAGTGGAACTATTATTAGTGTTGTCGAGACTCCATCCCAAATGATGAGTCAATCAAATGATGACGATATTGTTCCAACATGGGAATATCAATTTGAATCCAAACACAAAAGAAATTTGcATATTCCTGAAATGTTTTGTCACTTATTCGTTAATCGCGATCAGAAAGAAATTACAATTATTGATGATCACAGTGGAAGAAGCTTTGTTGCAAAACTACATTTTTCGACGACCAATGTCAACAAAATCTACATTGGAAAGGGATGGAACAACTATGTCAGGGCAAATAATTTGAAAGAAGCCGATACTTTGATGTTTGTTTTGACCAAACCACCCAATTCAATTCATGTCTCAATTGTTGACTGA 1746 0.382 MFRKEYLSIYQTLERLQYILNGLYPPKVMLKSGIAPVENWLTFPDMGHILATAYNRVVVELTTHKIGHSETFFPLHGRPPLDPSARMMCIGMVPNHCVYVKLKDGCPLPPTYKEWKNNRVPEAETWEDTFLDRRRIKMIPSMWNDSTDALYFLVYLMELNPRRDICEYLEASAKMQRTKSERKRPLAKSQRISGECARCSEPIAKHQRTKSERKSEMARVFEFIKDITDRKDLWKIAVKVKDKWNATKEGKDFFQMVVVNSKGDDIFVLVPNELKQKFENEFPITVNNTYTMQNFQVTKNDDQFKPSHHDFKLRFTGGTLVEDVNVHQIADPVAKFKSFGDILNGDFREDYLYDVIGLIDEVGYQQPHPGNRKVQVKIILRDLGNNVINCTLWENYALKFFNVQTKAGDGPTIVFMKYAKIKHAGKYALTISNTWTTTQLFINDEVPEIIEFKKSLVAGIESGTIISVVETPSQMMSQSNDDDIVPTWEYQFESKHKRNLHIPEMFCHLFVNRDQKEITIIDDHSGRSFVAKLHFSTTNVNKIYIGKGWNNYVRANNLKEADTLMFVLTKPPNSIHVSIVD 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01352 581 CDD RPA1_DBD_B_like 354 456 - -
Tsu04g01352 581 Gene3D - 329 461 IPR012340 -
Tsu04g01352 581 CDD B3_DNA 494 581 IPR003340 GO:0003677
Tsu04g01352 581 SUPERFAMILY Nucleic acid-binding proteins 335 456 IPR012340 -
Tsu04g01352 581 Pfam Domain of unknown function DUF223 256 352 IPR003871 -
Tsu04g01352 581 Pfam B3 DNA binding domain 496 570 IPR003340 GO:0003677
Tsu04g01352 581 Gene3D - 220 323 IPR012340 -
Tsu04g01352 581 Gene3D - 488 581 IPR015300 -
Tsu04g01352 581 CDD RPA1_DBD_A_like 235 321 - -
Tsu04g01352 581 SUPERFAMILY DNA-binding pseudobarrel domain 497 577 IPR015300 -
Tsu04g01352 581 ProSiteProfiles B3 DNA-binding domain profile. 485 581 IPR003340 GO:0003677
Tsu04g01352 581 SUPERFAMILY Nucleic acid-binding proteins 222 322 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01352 Tsu-Chr4 13686394 13692855 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu04g01352 DUF223 1.2e-06 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01352 - - mtr:MTR_2g450060 221.476