Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01342 atgagcATTTCATTTGTCATAATCTCTAACAAAATAGCATTCCAATTCCtatgttgttttcttttctaCATTACCAAATTTCATTACACTTCAACTGCATCAACCTTACAAGGAAATGAAACTGATTTACAAGCTTTACTTGACTTCAAGAGTAGAATAGTTAAAGATCCATTTCACACACTAAGTTCATGGAATGATTCAATTTATCACTGCAACTGGTTAGGAATCACTTGTAACATCTTCAATGGAAGAGTCATGAATTTGATCCTTCCAGACATGACACTAGCAGGAACTCTTACACCATCAATAGGAAATCTTACACACCTTACAAAACTCAACCTTAGAAATAATAGCTTCCATGGAGAATTTCCTCAACAAGTTGGAAATTTATTATATCTTCAACATCTGAATATTAGTTATAATTCATTTAGTGGCAACATTCCAAGTAATCTAAGTCACTGCATAGAGTTAAGTATATTATCTTCTGGTCATAACAATTTCACAGGAAAAATTCCAACATGGATAGGAAATTTTTCTTTATCTCTACTTAATCTAGCTGTTAACAATTTGCATGGAACCATACCAAATGAGGTAGGAAAGTTATCAAAACTAACACTTTTTGCAGTAAATGGAAATCATTTGCATGGAAAAATTCCTCTTGAAGTTTTTAATATTTCTTCCTTATCCTTTCTTACCTTTTCTCAAAATAATTTTCATGGTAACTTACCTTATGATATTGGTTTCACTCTTCCTAATCTTGAAACATTTGCTGGTGGAGTCAATGATTTCACTGGAACAATACCTGAATCACTCTCTAATgcttcaaaattgaaaattcttgACTTTGCTGAAAATAGTCTCATTGGAACATTTCCTAAGAACATAGGAAGATTGACCCTTTTGACAAGACTCAATTTTGATACCAATAGACTTGGAAATGGTAAAGATGGTGACCTGAATTTTATTACTTCTTTGAATAATTGTACTTTTCTTGAAGTTTTAGGTCTTGCCGATAATCGTTTTGGAGGAGAATTGCCTAGTTCAATTGCTAATCTTTCAACCAATTTGAATGATCTTGATTTAGGTAAAAATGCAATATATGGAAGTATCCCTCTTGGAATAACTAACCTTGTTAACTTGACAAGTTTTGGATTAGGAAATAACAGCTTAAGTGGTTCTGTTCCTAATACAATAGGTATGCTTCAAAAGTTGGTTAATTTAGAATTGTATAGCAACAATTTTTCTGGTGTGATCCCTTCCTCCATAGGAAACTTGACTAGTTTAATAAGTCTACTCATAGAGGATAACAACTTCGAGGGAAGTATACCAGAGAGTCTTGGAAATTTGCAAAGTTTATTGATGCTAAATTTGAGTCATAACAAGCTCTATGGTGTTATACCAAGACAAGTACTTTCCTTGTCTTCTCTTTCAATTTACTTAGACTTGTCTCATAATTCTCTCACTGGCTCCTTACCTTTCGAAGTAGGTAAGCTAGTTAATCTTGCAGACTTGGATCTTTCGAAGAATAAATTGTCAGGAACGATTCCGTCCTCACTCGGAAGTTGTGCTAGTTTGGAAAGGCTGCATATGCAGGGAAACTTTTTTGAAGGAAATATTCCTTCAACTCTACAGAATTTGAGAGGGATACAAGATATCGACATGTCCTGCAATAACTTATCTGGGAAGATTCCTGAATTTCTTAGTGAGATCAAAGGGCTGATGGATCTCAATCTTTCTTACAATGATTTTGACGGAGAACTACCAATGAATGGAATCTTCAAAAATGCAACTTCCTTTTCAATTAATGGAAATATCAAGCTTTGTGGTGGTGTCTCAAAATTAAACCTGCCTGCATGTAATATCAAAGAAGCCTCTccccttaaaaaaatttataacccTAAGGTCAGTGTCCCTATAGCTAGTGCACTAGTATTTGTACTCTTTCTATCTTGTTTTGTAGCAATCTTCATGATAAAAAGATCATCAAGAAAGAAAATTTCAAGAGAAACAACTACAAAGAATTTGGAACTGAATATTTCTTACTTCGAAATTGCGAAGAGCACCGGTGAATTCTCCCATGATAATTTGATTGGCTCAGGAAGTTTTGGTTCTGTATACAAAGGAAAACTTCCATGTGACGGAACAATTATTGCTATTAAGGTGTTAAATCTTGAACAAAGAGGTGCTTCAAAAAGTTTCATTGATGAATGCAATGTTCTAAAAGTCATAAGGCACCGCAACCTTCTCAAGATCATAACAGCTATCTCAAGTGTTGATCATCAAGGTAATGACTTCAAAGCACTTGTGTTTGAGTTCATGTCCAATGGAAGTCTAGAAGATTGGCTGCATCCTATAAATCAGACAAAAAAACTGACATTTGTCCAAAGATTGAACATAGCAATTGATGTTGCATGTGCACTCGACTATTTACACAACTCTTGTGAAATGCCAATTGTTCATTGTGACATAAAGCCAAGCAATGTACTTCTTGACAGTGATATAGTAGCACATGTTGGTGACTTTGGTTTAGCTACATTTCTATTTGAAGACTCATGTGATTCTCCCAAACATTCAATTATGTCAGCTAGACTAAAGGGCTCTATTGGCTACATCCCTCCAGAGTATGGAGAGGGTGGACACCCTTCTGCACTGGGAGATGTTTACAGTTATGGGATACTATTGCTAGAGATTTTCACAGGAAAAAGACCAACAAATGAGATGTTTGAAGGTGGCATGGGAATTCAACAGTTTACAGCCTTAGCTTTACAAAATCATGCCAGAGATATAATTGATCCTTCATTGCTCTATGATCAAGAATTTGATGGAAAAGTTGATGATTATAGTGAAGAGATAGCACTAAGGAAGGAGAATGCACCTGGAGACCTTTCTACTATGGAGAATTGTTTGGTTTCTGTGTTGCAAATTGGAGTGACATGCTCTTCAACTTCACCAAGGGAAAGGATACCTATGAATATGGTTGTCAACAAATTGCATGCAATCAAGAACTCGATTAAGACTTAA 3021 0.3433 MSISFVIISNKIAFQFLCCFLFYITKFHYTSTASTLQGNETDLQALLDFKSRIVKDPFHTLSSWNDSIYHCNWLGITCNIFNGRVMNLILPDMTLAGTLTPSIGNLTHLTKLNLRNNSFHGEFPQQVGNLLYLQHLNISYNSFSGNIPSNLSHCIELSILSSGHNNFTGKIPTWIGNFSLSLLNLAVNNLHGTIPNEVGKLSKLTLFAVNGNHLHGKIPLEVFNISSLSFLTFSQNNFHGNLPYDIGFTLPNLETFAGGVNDFTGTIPESLSNASKLKILDFAENSLIGTFPKNIGRLTLLTRLNFDTNRLGNGKDGDLNFITSLNNCTFLEVLGLADNRFGGELPSSIANLSTNLNDLDLGKNAIYGSIPLGITNLVNLTSFGLGNNSLSGSVPNTIGMLQKLVNLELYSNNFSGVIPSSIGNLTSLISLLIEDNNFEGSIPESLGNLQSLLMLNLSHNKLYGVIPRQVLSLSSLSIYLDLSHNSLTGSLPFEVGKLVNLADLDLSKNKLSGTIPSSLGSCASLERLHMQGNFFEGNIPSTLQNLRGIQDIDMSCNNLSGKIPEFLSEIKGLMDLNLSYNDFDGELPMNGIFKNATSFSINGNIKLCGGVSKLNLPACNIKEASPLKKIYNPKVSVPIASALVFVLFLSCFVAIFMIKRSSRKKISRETTTKNLELNISYFEIAKSTGEFSHDNLIGSGSFGSVYKGKLPCDGTIIAIKVLNLEQRGASKSFIDECNVLKVIRHRNLLKIITAISSVDHQGNDFKALVFEFMSNGSLEDWLHPINQTKKLTFVQRLNIAIDVACALDYLHNSCEMPIVHCDIKPSNVLLDSDIVAHVGDFGLATFLFEDSCDSPKHSIMSARLKGSIGYIPPEYGEGGHPSALGDVYSYGILLLEIFTGKRPTNEMFEGGMGIQQFTALALQNHARDIIDPSLLYDQEFDGKVDDYSEEIALRKENAPGDLSTMENCLVSVLQIGVTCSSTSPRERIPMNMVVNKLHAIKNSIKT 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01342 1006 Pfam Leucine rich repeat 403 462 IPR001611 GO:0005515
Tsu04g01342 1006 SUPERFAMILY L domain-like 39 346 - -
Tsu04g01342 1006 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 37 1001 - -
Tsu04g01342 1006 Gene3D Transferase(Phosphotransferase) domain 1 773 1006 - -
Tsu04g01342 1006 ProSiteProfiles Protein kinase domain profile. 691 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01342 1006 SMART LRR_typ_2 377 400 IPR003591 -
Tsu04g01342 1006 SMART LRR_typ_2 106 130 IPR003591 -
Tsu04g01342 1006 SMART LRR_typ_2 401 425 IPR003591 -
Tsu04g01342 1006 SMART LRR_typ_2 498 522 IPR003591 -
Tsu04g01342 1006 SMART LRR_typ_2 449 473 IPR003591 -
Tsu04g01342 1006 SUPERFAMILY Protein kinase-like (PK-like) 667 997 IPR011009 -
Tsu04g01342 1006 Gene3D Phosphorylase Kinase; domain 1 652 772 - -
Tsu04g01342 1006 SUPERFAMILY L domain-like 354 609 - -
Tsu04g01342 1006 Gene3D Ribonuclease Inhibitor 249 315 IPR032675 -
Tsu04g01342 1006 Pfam Protein kinase domain 693 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01342 1006 Gene3D Ribonuclease Inhibitor 41 156 IPR032675 -
Tsu04g01342 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Tsu04g01342 1006 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
Tsu04g01342 1006 SMART serkin_6 691 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01342 1006 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 37 1001 - -
Tsu04g01342 1006 Gene3D Ribonuclease Inhibitor 157 248 IPR032675 -
Tsu04g01342 1006 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Tsu04g01342 1006 Gene3D Ribonuclease Inhibitor 316 626 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01342 Tsu-Chr4 13599663 13602981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01342 39 1001 Receptor kinase-like Gene Family AT3G47570 44.766 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu04g01342 Pkinase 4.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01342 - - gmx:100785230 1413.28