Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01327 ATGATGTTATCTAGAACAATGAATAGAGGAATTGAAGTTCTATCTCCAGCCTCCTATATCCAAAATTCCAATTGGTTGTTTGAAGAAAACAAGGGTTCTAAGTGGACTCAAGAAGAGAATAAGCTGTTTGAGAATGCTTTAGCTTATTATGATAAGGATACTCCTGATAGATGGATAAGGGTAGCAGAGATGATTCCTGGAAAAACTGTAGGTGATGTGATTAAACAGTATAGAGAGCTTGAAGAAGATGTGTGTGTTATTGAAGCCGGTTTGATACCGGTTCCTGGTTATACGACTAGTTCTTTCACATTGGATTGGGATAATAATCAAGGTTTTGATGAGTTCAAGCAATTTTGTAGTGTTGGTGAGAAAAGGGGTGGTTCGACTCGGCCATCTGAGCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAGGAGCATAGGCAATTTCTGTTGGGACTGAAGAAGTATGGTAAGGGAGACTGGAGAAATATCTCTAGGAATTTTGTGACCACAAGGACACCAACTCAAGTCGCAAGTCATGCTCAAAAGTATTTCATAAGGCAAGTTTCCGGAGGGAAGGATAAGAGAAGATCCAGTATCCATGACATCACAGTGGTTAATCTCCAAGAAACTAAATCTCCTTCATCAGACAGTAACAATGCTTCTTCTGCAGACCATTTAGCCAATTCCGCGAATCAACCACAGAATCATAATTTTTCCAGCATGGTTAAGCAAGAACATGACTTGAAATTTCCAGATGAGGAGGGTATGCCATTTGTTTTCAATTCAACTAAAGGAAACATGTTTGTGGCACCATTGTGTGGGATTTCTTCACACGAATCGAAATCACCGGGACATAATGTACTTCGAGGCACTCATCATGGATTCCAGTTTTCACCTTTTGATACTATTTTCCAAATGCAATCTATGCAGCATCAATGA 945 0.3989 MMLSRTMNRGIEVLSPASYIQNSNWLFEENKGSKWTQEENKLFENALAYYDKDTPDRWIRVAEMIPGKTVGDVIKQYRELEEDVCVIEAGLIPVPGYTTSSFTLDWDNNQGFDEFKQFCSVGEKRGGSTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQVSGGKDKRRSSIHDITVVNLQETKSPSSDSNNASSADHLANSANQPQNHNFSSMVKQEHDLKFPDEEGMPFVFNSTKGNMFVAPLCGISSHESKSPGHNVLRGTHHGFQFSPFDTIFQMQSMQHQ 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01327 314 ProSiteProfiles SANT domain profile. 142 190 IPR017884 -
Tsu04g01327 314 Coils Coil 314 314 - -
Tsu04g01327 314 ProSiteProfiles Myb-like domain profile. 27 81 IPR001005 -
Tsu04g01327 314 MobiDBLite consensus disorder prediction 208 238 - -
Tsu04g01327 314 CDD SANT 141 186 IPR001005 -
Tsu04g01327 314 MobiDBLite consensus disorder prediction 128 142 - -
Tsu04g01327 314 SUPERFAMILY Homeodomain-like 135 189 IPR009057 -
Tsu04g01327 314 PANTHER TRANSCRIPTION FACTOR DIVARICATA 7 259 - -
Tsu04g01327 314 SUPERFAMILY Homeodomain-like 33 88 IPR009057 -
Tsu04g01327 314 SMART sant 138 188 IPR001005 -
Tsu04g01327 314 SMART sant 31 83 IPR001005 -
Tsu04g01327 314 MobiDBLite consensus disorder prediction 123 142 - -
Tsu04g01327 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 190 IPR017930 -
Tsu04g01327 314 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 137 189 IPR006447 GO:0003677
Tsu04g01327 314 Gene3D - 140 190 - -
Tsu04g01327 314 ProSiteProfiles Myb-like domain profile. 134 186 IPR001005 -
Tsu04g01327 314 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 7 259 IPR043363 -
Tsu04g01327 314 Pfam Myb-like DNA-binding domain 33 79 IPR001005 -
Tsu04g01327 314 Pfam Myb-like DNA-binding domain 141 186 IPR001005 -
Tsu04g01327 314 CDD SANT 34 80 IPR001005 -
Tsu04g01327 314 Gene3D - 26 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01327 Tsu-Chr4 13455396 13458229 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g01327 Myb_DNA-binding 4.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01327 - - var:108329798 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01327 04 13455396 13458229 Tsu05g03285 05 44192234 44194056 ECH
Tsu04g01327 04 13455396 13458229 Tsu04g01327 04 13455396 13458229 ECH
Tsu04g01327 04 13455396 13458229 Tsu05g02726 05 37304420 37306836 ECH
Tsu04g01327 04 13455396 13458229 Tsu03g00929 03 8600108 8602068 ECH