Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01326 ATGAGTTCGCGATTAACTGGGAAGGTGAGATGGTTCAACGATCAGAAAGGGTATGGTTTCATTACCCCTGATGATGGTTCTGTAGAGCTTTTCGTTCACCAATCTGAGATCCAAACTAATGGTTTCCGTAGCCTTGCAGAAGGAGAGTCAGTTGAGTATCAAATTGAAATTGATAACAATGGGCGATCCAGGGCTGTTAGTGTGACTGGACCTAATGGTGCATCTGTTCAGGGAACCAAACGCGACAACGACGGTGGTTATGAGCATGGTGGTTATAGCGGTGGAGTCGGCTACGGTCATGGTGGTGAACAATGGGGCGGGCGTGGTGGACGTAGCGGTAGCTGCTATAACTGTGGTGAATTTGGCCATATGGCTAGGGATTGCAGCAACAGTGAAATCGGTGGAAGGTATAGAGGTGGCGGCTGTGACGAAAGTTGCTTCTGTTGTGGAGAATCTGGTCATTTCGTCGGAGATTGCCCAATCAAACCTCGTTAG 495 0.4869 MSSRLTGKVRWFNDQKGYGFITPDDGSVELFVHQSEIQTNGFRSLAEGESVEYQIEIDNNGRSRAVSVTGPNGASVQGTKRDNDGGYEHGGYSGGVGYGHGGEQWGGRGGRSGSCYNCGEFGHMARDCSNSEIGGRYRGGGCDESCFCCGESGHFVGDCPIKPR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01326 164 ProSiteProfiles Zinc finger CCHC-type profile. 146 160 IPR001878 GO:0003676|GO:0008270
Tsu04g01326 164 SUPERFAMILY Retrovirus zinc finger-like domains 108 162 IPR036875 GO:0003676|GO:0008270
Tsu04g01326 164 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 161 - -
Tsu04g01326 164 PANTHER COLD SHOCK PROTEIN 2 1 161 - -
Tsu04g01326 164 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Tsu04g01326 164 MobiDBLite consensus disorder prediction 65 79 - -
Tsu04g01326 164 Gene3D - 77 164 - -
Tsu04g01326 164 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Tsu04g01326 164 SMART csp_8 6 71 IPR011129 GO:0003676
Tsu04g01326 164 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Tsu04g01326 164 SMART c2hcfinal6 145 161 IPR001878 GO:0003676|GO:0008270
Tsu04g01326 164 SMART c2hcfinal6 114 130 IPR001878 GO:0003676|GO:0008270
Tsu04g01326 164 CDD CSP_CDS 6 70 IPR002059 GO:0003676
Tsu04g01326 164 Pfam Zinc knuckle 114 129 IPR001878 GO:0003676|GO:0008270
Tsu04g01326 164 MobiDBLite consensus disorder prediction 65 86 - -
Tsu04g01326 164 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Tsu04g01326 164 Gene3D - 1 76 IPR012340 -
Tsu04g01326 164 ProSiteProfiles Zinc finger CCHC-type profile. 115 130 IPR001878 GO:0003676|GO:0008270
Tsu04g01326 164 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Tsu04g01326 164 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Tsu04g01326 164 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01326 Tsu-Chr4 13444544 13445038 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Tsu04g01326 CSD 5.1e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01326 - K09250 gmx:100799708 182.956