Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01306 ATGATACCTTCTAAGGTTCCATTGGGTGAAGCATTCAATGACTATATAGTTCCTGGTAAAAGATACTCCTTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAACTTGGTCTGGTCATTGATTTGACAAATACTTCTAGATACTATCCAGTATCAGATCTAAAGAAAGAGGGTATCAAGCATGTTAAGATCCAATGCGAGGGCCGAGGTTCAGTACCTGATAATTCATCTGTTAATCATTTTGTGTTCGAGgttatacaatttttatcacATCAAAAACACTCAAAGAAGTATATACTTGTTCATTGTACACATGGTCATAATCGTACAGGATATATGATCATCCATTATCTAATGCGCACAATGTCAATGTCTATTACTCAGgcaataaaaatattttctgatgCACGTCCTCCGGGAATCTATAAACCGGAGTATATTGATTCATTATATAAATCCTATCATGAAAAGAAGCCTGAAATGATAGTTTGTCCTCCTACTCCTGAGTGGAAGAGGACTCCCCAACTCGTGGATCTGAATGGTGAAGCAGCTCCAGATGACGACGACGACGATGATGGAGTACCAGGTCCTCCGTTGCACGAGAACCACGAGATAGATGCAATAATGACAAATGATGATGTTTTGGGAGATGAGATACCTAATGATCAGCAATATGCATTTCGCCAGTTCTGCTTTCAGATACTCAAATTGGGGGTTGGGGCCAGAGGAAACATGCAATTTCCAGGGTCGCACCCAGTTTCTTTAAACAGGGATAATTTACAGCTGTTGCGACAGCGTTACTACTATGCAACATGGAAAGCTGATGGAACAAGATATATGATGCTAATAACTATGGATGGATGCTACTTGATTGATAGAAACTTCAATTTTAGAAGGGTTCAAATGAGGTTTCCATGCAGGGTTACAAATGATGGCTTGGCAGAGAAGACTCACCACTTCACATTACTTGATGGGGAGATGATTATTGATACATTGCCAGATTCAAAAAAGCAGGAAAGGAGATACCTAATATATGATCTGATGGCAGTCAACCTAGTTTCAGTGATAGAGCGACCTTTCTGTGAACGGTGGAAGATGCTTGAGAAAGAAGTAATTGAACCCAGGAATCAGGAACGGTACCAAGGAAAAAATCCTTACTATAGATATGACATGGAGCCTTTCAGGGTGAGGAGGAAAGATTTTTGGTTGCTCTCTACTGTCACAAGACTTTTGAACGAATTCATTCCGAAACTCTCACATGATGCAGATGGTCTCATATTCCAGgGATGGGACGATCCTTATGTACCTCGCACACATGAAGGTCTCTTAAAGTGGAAATATGCTGATCTGAATTCAGTTGATTTTCTCTTTGAGATTGATGATGATCGCCAGCTTCTTTTTCTCTACGAACGTGGAAAAAAGAAACTCATGGAAGGGTATATTGTTGCTTTCGAAGAAGGTTCAGACCCCTTGCTTTATTCTGGAAAGATTATCGAGTGTGCTTGGGATGGTGATAGAAACGAATGGATTTTCAAGCGAGTCAGAACAGACAAGTCAACTCCCAATGACATCAATACTTACAAGAAGGTGATGCGAAGTATAAGAGACAATATCACGGAGGATGTCCTATTGACTGAAATAAATGAGATAATCCGCCTTCCCATGTATGCCGACAGGATAAGAATTGATAGCAAAGGACATCACCACAATAGTATGGCTAGGCGAAGGTAG 1737 0.3949 MIPSKVPLGEAFNDYIVPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVSDLKKEGIKHVKIQCEGRGSVPDNSSVNHFVFEVIQFLSHQKHSKKYILVHCTHGHNRTGYMIIHYLMRTMSMSITQAIKIFSDARPPGIYKPEYIDSLYKSYHEKKPEMIVCPPTPEWKRTPQLVDLNGEAAPDDDDDDDGVPGPPLHENHEIDAIMTNDDVLGDEIPNDQQYAFRQFCFQILKLGVGARGNMQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRNFNFRRVQMRFPCRVTNDGLAEKTHHFTLLDGEMIIDTLPDSKKQERRYLIYDLMAVNLVSVIERPFCERWKMLEKEVIEPRNQERYQGKNPYYRYDMEPFRVRRKDFWLLSTVTRLLNEFIPKLSHDADGLIFQGWDDPYVPRTHEGLLKWKYADLNSVDFLFEIDDDRQLLFLYERGKKKLMEGYIVAFEEGSDPLLYSGKIIECAWDGDRNEWIFKRVRTDKSTPNDINTYKKVMRSIRDNITEDVLLTEINEIIRLPMYADRIRIDSKGHHHNSMARRR 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01306 578 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 213 449 - -
Tsu04g01306 578 ProSitePatterns Tyrosine specific protein phosphatases active site. 103 113 IPR016130 GO:0016311|GO:0016791
Tsu04g01306 578 SUPERFAMILY Nucleic acid-binding proteins 451 562 IPR012340 -
Tsu04g01306 578 MobiDBLite consensus disorder prediction 181 204 - -
Tsu04g01306 578 Gene3D - 487 555 IPR012340 -
Tsu04g01306 578 Pfam mRNA capping enzyme, catalytic domain 253 448 IPR001339 GO:0004484|GO:0005524|GO:0006370
Tsu04g01306 578 Pfam Dual specificity phosphatase, catalytic domain 36 154 IPR000340 GO:0008138|GO:0016311
Tsu04g01306 578 SMART dsp_5 18 160 IPR020422 GO:0006470|GO:0008138
Tsu04g01306 578 ProSiteProfiles ATP-dependent DNA ligase family profile. 335 476 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tsu04g01306 578 Gene3D Protein tyrosine phosphatase superfamily 1 195 IPR029021 -
Tsu04g01306 578 ProSiteProfiles Dual specificity protein phosphatase domain profile. 6 162 IPR020422 GO:0006470|GO:0008138
Tsu04g01306 578 PIRSF mRNA_capping_HCE 1 578 IPR017074 GO:0004484|GO:0006370|GO:0140818
Tsu04g01306 578 Gene3D DNA ligase/mRNA capping enzyme 212 448 - -
Tsu04g01306 578 CDD Adenylation_mRNA_capping 241 449 IPR001339 GO:0004484|GO:0005524|GO:0006370
Tsu04g01306 578 CDD RNA_5'-triphosphatase 2 154 - -
Tsu04g01306 578 PANTHER MRNA-CAPPING ENZYME 1 578 - -
Tsu04g01306 578 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 2 172 IPR029021 -
Tsu04g01306 578 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 81 150 IPR000387 GO:0016311|GO:0016791
Tsu04g01306 578 Pfam mRNA capping enzyme, C-terminal domain 453 546 IPR013846 -
Tsu04g01306 578 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 1 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01306 Tsu-Chr4 13234336 13243365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01306 1 578 Protein tyrosine phosphatase (PTP) family AT3G09100 70.275 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01306 K13917 - gmx:100803597 1076.62