Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01302 ATGCTTCAGATTCGGCTTAGTAAGAATCCTTCGTCTGATGGATCGGCTGGGGTGAAGCATTCCCCTGTTGAAACTGTTACGGTTGCATGCCCTGACCATTTAGTCCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGTACAGCTACTGGTTCATCTGTTGTTAGGAATGTGGGTCGGAGATCTCGCCGTCAGCTTGGTGAACGAGTTCATTTCTGTGTTCGCTGTGATTACCCGATCGCAATTTATGGACGGCTGAGCCCTTGTGAGCATGCTTTCTGTCTTGATTGTGCTAGAAGTGATTCATTGTGCTACCTATGTGATGAACGAATCCAGAAGATTCAGACAGTCAAAGTGATGGAAGGAATCCTAGTATGTGCAGCTCCTCATTGTCTGAAGACATTCTTCAAGAGAGCTGACTTTGAATCTCATATCCATGAATACCACACCGATCTTCTTCCCTCCAATCCAGATAAAGAAGACGGAAATGAGTCAGAGGCACAAAGTGTTAGACAACCTACAGCCTCAGACTCCACTGCTCGAGGCCCCCAAAGACAAGTTTTTTCACCAGGTTCGAATTCTCAACCCCATGATCTGGAAGACAGAACCCGTCGGCAACCAGTAAGAGATCAAACTCCTTCAAGGCCAACAATGCAGCAAAAGCCACCATTTTTCGGCCAACAGCATCACTCTTCAGATACCATGTCTGGTTCTGTTGGAGGTATGCAACAGGGAATTCATCAACAAAGTTTTGACATGCAGCAGCATCCCCTACAAGAACCTTCCCAATTTACCGACAGGCAGCAATCAGTTGGTCCAGATAACTCATTTCCTGAGTATCCAACAATGCACCCTGCACAACCTGGCAATGTCCCCCCGCACTCAAACCCAATGCTGAATCCACCCATGCCATTTGGTTATCCCCCATACCCCCAAGACCGAGCCCAACCATTTTATGCTGCTCCCTATGATAATATGCCTAGGCAGGAATCAGCTTCTGATATAGGCGGGGACCCAAATTCATTAATGGGTTTCCCTCAAGGTGTCCCGAATGGTCCAAATTTTCAAGGAAATTATCCCCAGCCCTGGAATGCAGCAGGTGTTCCTTTTGAACAAGCACAAGGTGGTGGCATGGTTGTGGATCCAAGGGATGCCAAAGGTATACTAGCACCACAACCCATGTCCCTCCCACCACCACCGCCGCCACCAGCACACATGATGAAACAGAACTACTATTCTGGCGAGCATGGGCATGATGGTCAAGGTTATGGCTGGCAGCATGATAACCGTGACAGCTTTAATGGTCAAGGCTAA 1311 0.4798 MLQIRLSKNPSSDGSAGVKHSPVETVTVACPDHLVLADLPVAKGIGTATGSSVVRNVGRRSRRQLGERVHFCVRCDYPIAIYGRLSPCEHAFCLDCARSDSLCYLCDERIQKIQTVKVMEGILVCAAPHCLKTFFKRADFESHIHEYHTDLLPSNPDKEDGNESEAQSVRQPTASDSTARGPQRQVFSPGSNSQPHDLEDRTRRQPVRDQTPSRPTMQQKPPFFGQQHHSSDTMSGSVGGMQQGIHQQSFDMQQHPLQEPSQFTDRQQSVGPDNSFPEYPTMHPAQPGNVPPHSNPMLNPPMPFGYPPYPQDRAQPFYAAPYDNMPRQESASDIGGDPNSLMGFPQGVPNGPNFQGNYPQPWNAAGVPFEQAQGGGMVVDPRDAKGILAPQPMSLPPPPPPPAHMMKQNYYSGEHGHDGQGYGWQHDNRDSFNGQG 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01302 436 MobiDBLite consensus disorder prediction 150 241 - -
Tsu04g01302 436 MobiDBLite consensus disorder prediction 391 405 - -
Tsu04g01302 436 MobiDBLite consensus disorder prediction 150 165 - -
Tsu04g01302 436 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Tsu04g01302 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Tsu04g01302 436 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 153 IPR013087 -
Tsu04g01302 436 MobiDBLite consensus disorder prediction 387 436 - -
Tsu04g01302 436 MobiDBLite consensus disorder prediction 209 241 - -
Tsu04g01302 436 MobiDBLite consensus disorder prediction 253 275 - -
Tsu04g01302 436 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 409 IPR040383 GO:0016567|GO:0061630
Tsu04g01302 436 MobiDBLite consensus disorder prediction 253 277 - -
Tsu04g01302 436 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 409 - -
Tsu04g01302 436 MobiDBLite consensus disorder prediction 166 195 - -
Tsu04g01302 436 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
Tsu04g01302 436 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01302 1 432 C2H2 Transcription Factor Family AT5G01160 42.857 5.98e-102 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01302 K15685 - gmx:100817582 683.33