Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01265 ATGACAACTTTGCAAATGACCCATGTTGATTTAGAACAAggaaatcatcatcatcatcatcatagttCTGTGAGTGGTGAAGGTAGTTTATGTTTTTCTGATGCTGATGATGGTTCAAGCTATTCACGTTTCTATTCAACAAATGGTGGTTCATATGATGATTACTCTTTTGCTTGTGTTTCTGATCCTGAACTTGGAACTGGTGTTCATGATTCTGGTAGAGTTTCATCTGTATCTGATTGTTCTGTTGAGGTTGAAATTAGAATTGGGGTTCCTGAGATTAAGGTGCATTTAGCTAAAGTGGAGAAAGATTGTAGAATTTGTCACATGGGTTTGGAAAGTGAAAGTCATGAATCTGGTCCTCCAATTGAATTGGGTTGTTCTTGTAAAGAAGATTTAGCTGCTGCTCATAAAAACTGTGCTGAAGCTTGGTTCAAGATTAAGGGAAATAGGACATGTGAAATTTGTCATTCAGTAGCGCGGAACGTTTACAGTGCAAATGAGGAATCAACAGAGAATGTGAGTGACAATAACAATGCTACCGCATCATCCACACTCTCAACAGCTGCTCCTACAGCAGAAACTCAAAGATTTTGGCACGGCCATCGTTTCTTGAATTTTCTGCTTGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTCCATTTCAACATGCCATCAACTTAG 690 0.371 MTTLQMTHVDLEQGNHHHHHHSSVSGEGSLCFSDADDGSSYSRFYSTNGGSYDDYSFACVSDPELGTGVHDSGRVSSVSDCSVEVEIRIGVPEIKVHLAKVEKDCRICHMGLESESHESGPPIELGCSCKEDLAAAHKNCAEAWFKIKGNRTCEICHSVARNVYSANEESTENVSDNNNATASSTLSTAAPTAETQRFWHGHRFLNFLLACMVFAFVISWLFHFNMPST 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01265 229 MobiDBLite consensus disorder prediction 167 187 - -
Tsu04g01265 229 PANTHER ZINC FINGER, RING-CH-TYPE 5 228 - -
Tsu04g01265 229 PANTHER OS01G0850200 PROTEIN 5 228 - -
Tsu04g01265 229 SMART ringv_2 104 157 IPR011016 GO:0008270
Tsu04g01265 229 Pfam RING-variant domain 105 156 IPR011016 GO:0008270
Tsu04g01265 229 MobiDBLite consensus disorder prediction 1 27 - -
Tsu04g01265 229 CDD RING_CH-C4HC3_MARCH 105 157 - -
Tsu04g01265 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 168 IPR013083 -
Tsu04g01265 229 SUPERFAMILY RING/U-box 102 160 - -
Tsu04g01265 229 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01265 Tsu-Chr4 12829779 12833438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01265 69 229 C3H Transcription Factor Family AT5G05830 60.494 1.26e-68 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01265 - - gmx:100808666 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01265 04 12829779 12833438 Tsu05g03271 05 44019563 44022882 ECH
Tsu04g01265 04 12829779 12833438 Tsu04g01265 04 12829779 12833438 ECH