Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01254 ATGGCTACAAATCAAGAAGATGTGAAACTTTTGGGAGCTACAGTAAGCCCATTTGTGTGCAGAGTAAAGATTGCTCTAAAGTTGAAGGAAATTGAATACAAATATGTTGAACAAAAGTTAGGCAATAAAAGTGAAGAACTCATCAAATATAACCCAGTTTataaaaaggttccagtttTTATTCACAATGATAAGCCCATATCTGAATCACTTGTGATTCTTGAGTACATTGATGAGATTTGGAAGCAAAATCCAATTTTGCCTAATGATTCTTATCAAAGATCTCAGGCTCGTTTCTGGTCCAAATTCATAGATGATAAGATTGTGGGTGCTTCATTCAAAACCGTTTTCACAATTGATGAGAAAGAGCGCGAGAAGCATATTGAAGAAGCAACCGAGGCTCTACACATTCTTGAGAATGAGGTGAAGGGAAAGTACTTTGGGGGAGAAGAGATTAACTTTGTGGATATTACTGCTGTTTTCATTGCTTATTGGATCCCTTTGGTTTATGACATTACAAACTTGAAATTGTTCAGTGAAGAAAAGTATCCAAAGCTTTACAATTGGAGTCAAGAATTTCTCAACCATCCTATTGTGAAGGAGAGTCTGCCTCCTAGAGTCCCTCTTGTCGCTTTCTTTAAGGCTCGCTATGAAGGTTTTCTTGCTGCTTCAAAATAG 678 0.3614 MATNQEDVKLLGATVSPFVCRVKIALKLKEIEYKYVEQKLGNKSEELIKYNPVYKKVPVFIHNDKPISESLVILEYIDEIWKQNPILPNDSYQRSQARFWSKFIDDKIVGASFKTVFTIDEKEREKHIEEATEALHILENEVKGKYFGGEEINFVDITAVFIAYWIPLVYDITNLKLFSEEKYPKLYNWSQEFLNHPIVKESLPPRVPLVAFFKARYEGFLAASK 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01254 225 CDD GST_N_Tau 8 81 - -
Tsu04g01254 225 SUPERFAMILY Thioredoxin-like 7 108 IPR036249 -
Tsu04g01254 225 PANTHER GLUTATHIONE S-TRANSFERASE-RELATED 1 220 - -
Tsu04g01254 225 Gene3D - 90 224 - -
Tsu04g01254 225 SUPERFAMILY GST C-terminal domain-like 79 218 IPR036282 -
Tsu04g01254 225 CDD GST_C_Tau 92 216 IPR045074 GO:0004364|GO:0006749
Tsu04g01254 225 SFLD Main (cytGST) 4 223 - -
Tsu04g01254 225 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 220 IPR045073 -
Tsu04g01254 225 Pfam Glutathione S-transferase, C-terminal domain 112 197 IPR004046 -
Tsu04g01254 225 Pfam Glutathione S-transferase, N-terminal domain 7 79 IPR004045 -
Tsu04g01254 225 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 217 IPR010987 -
Tsu04g01254 225 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 6 85 IPR004045 -
Tsu04g01254 225 SFLD Main.3: Omega- and Tau-like 4 223 IPR045073 -
Tsu04g01254 225 Coils Coil 121 141 - -
Tsu04g01254 225 Gene3D Glutaredoxin 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01254 Tsu-Chr4 12659348 12661192 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01254 3 218 Glutathione S-transferase Gene Family AT2G29420 45.161 6.75e-68 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01254 K00799 - gmx:100806714 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01254 04 12659348 12661192 Tsu04g01254 04 12659348 12661192 ECH