Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01242 ATGGCGATACATTTATACAAAACTTCTATCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTGAAATCAAATCGTTTGATTTCGGGACAGCATCATTGTGGTAAAGGCCGTAATGCTAGAGGAATCATTACCGCAGGGCATAGAGGGGGGGGTCATAAGCGTCTATACCGTAAAATTGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACTATAGAATATGACCCTAATCGAAATGCACGCATTTGTCTCATACACTATGGGGATGGTGAGAAAGGATATATTTTACACCCCAGAGGGTCTAGAATTGGAGATACCGTTGTTTATGGTACAGAAGTTCCGATAAAAATGGGAAATGCCCTACCTTTGAAATCTACTTCAACTGATATGCCCTTAGGCACGGCCATACATAACATAGAACTAACACTTGGAAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCAACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCCAAAAACTGCTCAGCTACAGTCGGACAAGTAGGGAATGTTGGG 594 0.4276 MAIHLYKTSIPSTRNGAVDSQVKSNRLISGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNARICLIHYGDGEKGYILHPRGSRIGDTVVYGTEVPIKMGNALPLKSTSTDMPLGTAIHNIELTLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01242 198 SMART Ribosomal_L2_2 37 113 IPR002171 GO:0003735|GO:0005840|GO:0006412
Tsu04g01242 198 TIGRFAM rplB_bact: ribosomal protein uL2 20 197 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Tsu04g01242 198 PANTHER RIBOSOMAL PROTEIN L2 3 198 IPR002171 GO:0003735|GO:0005840|GO:0006412
Tsu04g01242 198 PANTHER 50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC 3 198 - -
Tsu04g01242 198 SMART Ribosomal_L2_C_2 119 198 IPR022669 GO:0003735|GO:0005840|GO:0006412
Tsu04g01242 198 SUPERFAMILY Nucleic acid-binding proteins 4 120 IPR012340 -
Tsu04g01242 198 Pfam Ribosomal Proteins L2, C-terminal domain 120 197 IPR022669 GO:0003735|GO:0005840|GO:0006412
Tsu04g01242 198 Pfam Ribosomal Proteins L2, RNA binding domain 37 112 IPR022666 GO:0003735|GO:0005840|GO:0006412
Tsu04g01242 198 Gene3D - 1 109 IPR012340 -
Tsu04g01242 198 SUPERFAMILY Translation proteins SH3-like domain 122 197 IPR008991 -
Tsu04g01242 198 Gene3D - 113 196 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01242 Tsu-Chr4 12559535 12562734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01242 48 194 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 32.468 2.89e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01242 K02886 - jre:26380847 359.762