Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01234 aTGGCTGAGGAGGGTTTTGAACACTACCATATTCCACAACAAAGCAGAAGAGAAAAGCTTAGatttttatctcaaaatcaacaaaatttcaTCGAATCTTCAACAACCCTTCATCCAAATTATCCACCTTTACCTTCTCCCTACGACCCTTCACTCATTTCTTCTGTTTTCTTACCTTCAACCAACCAAAACCACACTATTATGAATACTAACCCTTTACTTTATCAACCACAAAACCATGGTTACACTGATGTTTatggtagtagtagtagtaacaATAGTGAAGCAATGTTATTAAAGTCTGAacctttatctttatctttatcatctcacaaaaacaatcaaaatcatCACATGAATATTCATCACCCTTTAGAGGTTAATAATAATCTTCAGAAATATGGTTCTGTTGTTGATGTTTCAAGAAACACAGTTCCATTAGGACCATTTACTGGTTATGCTTCTGTTTTGAAAGGATCAAGGTTTTTGAAACCTGCTCAACAATTATTAGATGAGATATGTTTGGTTGGAGTTCGTGCTGATGATAAAATTGTTACTGCTGTTGATGCATCTTTGATATTGGAAAATCATTATGAACAAGAGAGCAATGAATTTGTTAATGGTGTTGATGATGGAAATAATGAAGGTAGGAAGAACAAGTCTAGATTATTAACCGTGCTTGATGagATTTGCAGGAGGTACAGACAGTACTATCAGCAGATTCATGCAGTAATAACTTCGTTTGAATATGTTGCCGGCCTCGGTAATGCAGCACCATATGCAAGTTTGGCTATAAATGCAATGTCCAGACATTTTAGATGCTTGAAGAATATGATTACTGACCAGCTTCAGTTTATCAGTAAGTCCAATTTTCAGATAAGCAATAGAAAGGATGAATCTCCAAGGTTTTGTAACGGTGATGGAGCCTCTTACAGCCAAAGGCCAGGGTTTCTAGAGCACGTCCAACAACCTGTTTGGCGACCTCAAAGAGGACTCCCCGAGCGCGCTGTGAGTGTTCTCAAGGCATGGTTGTTTGAACACTTTCTGCATCCTTATCCTACTGATACTGACAAGCTAATGTTGGCTAAACAAACCGGTCTATCTCGTAATCAGGTATCTAATTGGTTTATAAATGCAAGAGTTAGGCTTTGGAAACCAATGGTGGAGGAAATACACATGCTTGAATCACAACAATCTCAAAAGGAATCATCACAAAGAGAGGAACATAGTGGTAACAATTTGAGCGATAACCACATTGCTGATCAGAATCCATCTTCATCCACAGACAAGTTTCACGATGTCACATATAAACGAACTAGAAACGAACTTCACAATCTGCCGGTGCTGAATCAACAAGTTGGTAATGTTGGAGTGAGCGTGATGAATAACGGCACAACAAGCAATGGCGTATCTCTAACACTTGGCCTTCATCAAAATCATGGAATAGGGTTATCTGATCAGCGATTCGACATGTGTGCATCACATCGTTTTGGTCTTGCACTTCAACCTGATAGCTACGTCATGAGTGGTTTTCAATTACAGAATCGACAATTCGGGAGAGATTTTATCGGAGGGCAACTTTTGCATGATTTTGTAGGATGA 1602 0.3683 MAEEGFEHYHIPQQSRREKLRFLSQNQQNFIESSTTLHPNYPPLPSPYDPSLISSVFLPSTNQNHTIMNTNPLLYQPQNHGYTDVYGSSSSNNSEAMLLKSEPLSLSLSSHKNNQNHHMNIHHPLEVNNNLQKYGSVVDVSRNTVPLGPFTGYASVLKGSRFLKPAQQLLDEICLVGVRADDKIVTAVDASLILENHYEQESNEFVNGVDDGNNEGRKNKSRLLTVLDEICRRYRQYYQQIHAVITSFEYVAGLGNAAPYASLAINAMSRHFRCLKNMITDQLQFISKSNFQISNRKDESPRFCNGDGASYSQRPGFLEHVQQPVWRPQRGLPERAVSVLKAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQSQKESSQREEHSGNNLSDNHIADQNPSSSTDKFHDVTYKRTRNELHNLPVLNQQVGNVGVSVMNNGTTSNGVSLTLGLHQNHGIGLSDQRFDMCASHRFGLALQPDSYVMSGFQLQNRQFGRDFIGGQLLHDFVG 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01234 533 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 68 498 - -
Tsu04g01234 533 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 68 498 - -
Tsu04g01234 533 Pfam Homeobox KN domain 343 382 IPR008422 GO:0003677|GO:0006355
Tsu04g01234 533 SMART HOX_1 326 390 IPR001356 GO:0003677
Tsu04g01234 533 SMART prehox3 151 281 IPR006563 -
Tsu04g01234 533 MobiDBLite consensus disorder prediction 395 431 - -
Tsu04g01234 533 Gene3D - 329 391 - -
Tsu04g01234 533 Pfam Associated with HOX 156 280 IPR006563 -
Tsu04g01234 533 MobiDBLite consensus disorder prediction 415 430 - -
Tsu04g01234 533 CDD homeodomain 326 387 IPR001356 GO:0003677
Tsu04g01234 533 ProSiteProfiles 'Homeobox' domain profile. 323 386 IPR001356 GO:0003677
Tsu04g01234 533 SUPERFAMILY Homeodomain-like 328 393 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01234 Tsu-Chr4 12456193 12459980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01234 4 533 Homeobox Transcription Factor Family AT5G02030 44.295 2.40e-115 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Tsu04g01234 POX 4.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01234 - - mtr:MTR_7g065050 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01234 04 12456193 12459980 Tsu04g01234 04 12456193 12459980 ECH