Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01196 ATGTGGGGGGACATCAGTTTCAAATCCCCAGATGATGTATATTCTTCAAGGACTGAAGGAACTGATGATTCAGGAGATTACTCAGTTCGACTTCTCATGATCGAAATGTCTCATCGAAAATACAACTTGGGAGAAGGGGTTGTTGGCAAATTAGCACTCATCAAGGAGCATTTTTGGGCTTCCTGTGAGGATATTTTGGCTGGTAAATTTGACACTAATTTAATTCCTGAGTGTCCTGATGAGTGGCTTCTTCAATTTGCATCAGGCATCAAGACTATTGTGCTGGTTCCAGTTCTTCCACAAGGAGTGTTGCAATTTGGTTCATTTAAAGCGGTTGCCGAAGACCTAGAATTTGTTACCAATATCAAGGAGcaattcaatttcattcatTGTTTGGAAGCTAGTCCTACACCTTTGAACTTGGGAACTGATGCTCAAGATTGGTCATTCTCAGCTCTATCGCATTACTTGATGGATAGCTTCAACGAATCTTCGTCAGCTAGTACTTCTCGCAATATGAATAAACCAACAAGGTTTCCTCAGGATGATGACTGGTTACCTAGAGAAATTCAGCCAAAATCTCTTAAAAGATCACATGAAAATGAGATGGTTTCCTCATCATTTGAAACATCAATTGATCCAAAACATATTGGTTATGTGGAGACAAAATCAAATCATTTGGTAGAAGAGATATGGCCCTGGTCTCAATTTGTCGACAATGAAGGAAAGTTCGGTGAGATGTCGAATGGATTTAGTTCTTATTCTGATAATAATATGACCGAGCAAGAATTTGGAGGCACTGGAACTGGTCATGTTGATGTTAagagtttcaatttcaatgaCTTCTCTACTGTTCCTTCAATGATTGAATTGGACAAAGCAATTGGATCTGTTGCATATAGACAGAAAGGAAAATCTATACCAAAATATATCTCAGATGAGGATACTTTCAGCAGTTCAACTTTAATATCCAATAAAAAGCAACATGATCATATTAAAAGTTTGGAGTTTCCTGAAGGAACAGATCCAGAATATCTACTAGATGCGGTTGTTGGCAATTTATACAGCGCCACTGATGATACTTCATTTGGGTCCAACAGTTTTAGGTCTCTTATAACAATGCCGTCGGAGTTTTCTGTCCCCATTCAGCCAAAAATCTATTCTGAAGAAAGCAACATGTTTCTGAAAAGTTCCGATGTTGGAAGTGATTTTATGCCTCCGGTTACGGCCAAGGGTAAAGATGTATTCACAAGCCATTATATATCAACTTTTGATGGAAACTCAAGCTTATTGGTTGATGAGGAACCACAGGAAAAGGTCAATAGTCATATGGAGCCTATTAGTAAACCAAAGCTCTCTAGCGCGAGCAAGAAAAGAGCAAAAGcaggtaataacaaaaattcAAGGCCCAGAGATCGACAGCTGATCATGGACAGGATGAAGGAGTTGAGGGAACTTATCCCAGATGGTGGAAGGTGTAGCATCGACAACCTCTTGGAACGAACTGTAAAGCACATGATGTACTTAAGAATGGTAACAAGCCAGGCTGAGAAACTGAAACGATTTGCTGATTGTGAGGTACCTGAAAGGAAAAGGCAGAAAATAAATGGCAGTCATCCTGGAAGAAGCTGTGCATTTGACTTTGAAAGTGAACAATCATGGCCCATAGTCATAGAAGATTTGGAATCCGCAGGGCACATGCTCATAGAGATGGTATGCAGTGAGCATGGGCTTTTCTTGGAGATTGCTCAGGCGATCCGAAGACTGGACATTACCATCTTGAAAGGGACTTTAGAAAACCGTTCAAGTACCAGCTGGGCTTGTTTCATTGTTGAGGTTCCAAGAGGTTTTCACAGGATGGATATTTTATGCCCTTTACTGCATCTTTTGCAGCTTAGGAGAAGTCCTGTCTCATAA 1917 0.3933 MWGDISFKSPDDVYSSRTEGTDDSGDYSVRLLMIEMSHRKYNLGEGVVGKLALIKEHFWASCEDILAGKFDTNLIPECPDEWLLQFASGIKTIVLVPVLPQGVLQFGSFKAVAEDLEFVTNIKEQFNFIHCLEASPTPLNLGTDAQDWSFSALSHYLMDSFNESSSASTSRNMNKPTRFPQDDDWLPREIQPKSLKRSHENEMVSSSFETSIDPKHIGYVETKSNHLVEEIWPWSQFVDNEGKFGEMSNGFSSYSDNNMTEQEFGGTGTGHVDVKSFNFNDFSTVPSMIELDKAIGSVAYRQKGKSIPKYISDEDTFSSSTLISNKKQHDHIKSLEFPEGTDPEYLLDAVVGNLYSATDDTSFGSNSFRSLITMPSEFSVPIQPKIYSEESNMFLKSSDVGSDFMPPVTAKGKDVFTSHYISTFDGNSSLLVDEEPQEKVNSHMEPISKPKLSSASKKRAKAGNNKNSRPRDRQLIMDRMKELRELIPDGGRCSIDNLLERTVKHMMYLRMVTSQAEKLKRFADCEVPERKRQKINGSHPGRSCAFDFESEQSWPIVIEDLESAGHMLIEMVCSEHGLFLEIAQAIRRLDITILKGTLENRSSTSWACFIVEVPRGFHRMDILCPLLHLLQLRRSPVS 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01196 638 MobiDBLite consensus disorder prediction 165 185 - -
Tsu04g01196 638 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 32 126 IPR025610 -
Tsu04g01196 638 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 638 IPR043561 GO:0003700|GO:0006355
Tsu04g01196 638 MobiDBLite consensus disorder prediction 435 472 - -
Tsu04g01196 638 MobiDBLite consensus disorder prediction 1 22 - -
Tsu04g01196 638 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 460 509 IPR011598 GO:0046983
Tsu04g01196 638 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1 1 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01196 Tsu-Chr4 11884388 11890600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01196 290 631 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 35.519 1.68e-43 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01196 - - aprc:113862780 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01196 04 11884388 11890600 Tsu04g01196 04 11884388 11890600 ECH