Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01186 ATGGAGTACAACCCTAATAAATCTGACCAAATAAGATGGAACTCAGATGATCTAGGTGGTCCTGGACAAGTTAGGTCTTATTCTTGTACCTTTTGCAAGAGAGGATTTTCAAATGCTCAAGCATTAGGAGGCCACATGAATATCCATAGAAGAGATAGAGCCAAGCTCAAACAATCTTCCGAAGAAAATTCGCTTTCTTTGGACATCTCAACCAAGAACACAAATGATCCTGACCATATTGATTTGGAACAGAATCGTGAAACTCAAAGGGGAAAGTTTACAAAAGAATTTCCTCGTAGTTCTTCATTTGTTGATATAAAGGGAGGTGGTGTTATGGCTCAAAGGATTGAAGAGAAGAAATGTGATATAGATCTTGAGCTTAGGTTAGGATATGACCCAATAGATTCATCGACATTGAGCACTCGATCATTCTTTTGA 438 0.3813 MEYNPNKSDQIRWNSDDLGGPGQVRSYSCTFCKRGFSNAQALGGHMNIHRRDRAKLKQSSEENSLSLDISTKNTNDPDHIDLEQNRETQRGKFTKEFPRSSSFVDIKGGGVMAQRIEEKKCDIDLELRLGYDPIDSSTLSTRSFF 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01186 145 MobiDBLite consensus disorder prediction 47 92 - -
Tsu04g01186 145 SUPERFAMILY beta-beta-alpha zinc fingers 25 53 IPR036236 -
Tsu04g01186 145 PANTHER TRANSCRIPTIONAL REGULATOR TAC1 6 141 - -
Tsu04g01186 145 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Tsu04g01186 145 Gene3D Classic Zinc Finger 19 92 - -
Tsu04g01186 145 MobiDBLite consensus disorder prediction 74 92 - -
Tsu04g01186 145 PANTHER OS07G0101800 PROTEIN 6 141 - -
Tsu04g01186 145 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01186 Tsu-Chr4 11783449 11783886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01186 23 138 C2H2 Transcription Factor Family AT3G53820 38.686 2.04e-20 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu04g01186 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01186 - - lja:Lj1g3v3443990.1 185.267