Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01180 ATGACAACCCATCTTCAATTTTTGTtaccatttttgttctttttgtttgtACCAATTTTATCCCAAGTTGACCAAGTTTTATATGCAGGATTCAAGAACATTAGTCCTAAAAATCTAACCTTGAATGGAATTGCTGAGATAGAGAAAAATGGTATAATTAGATTAACAAATGAAACAAGCAGATTATTGGGTCATGCTTTTTATCCTTTACCTTTTCAGCTAAAGAACAAAACAACTGGTAaagttttctctttttcttcatcttttgcTCTTTCTGTTGTTCCTGAATATCCTAAACTTGGTGGTCATGGCATGGCTTTTACAATAGCACCTTCAAAAGATCTTAAAGCTTTACCTAGTCAATATCTTGGCCTTCTTAATTCAAGTGATGTTGGTAATTTCTCTAACCATCTTTTTGCTGTTGAGTTTGATAGTGTTCAAGATTTTGAGTTTGGTGATATTAATGATAATCATGTTGGTATAAACATTAATAGTATGCACTCAAATGCATCTGTTACTGCTGGTTATTATGATGATAATTTAGTGGTACaaaatattagtattaaaaGTGGTAAACCAATTTTAGTTTGGGTTGATTATGATTCTTCAATGAATCTTATTAGTGTTACACTTTCACCTACTTCAAATAAACCTAAAAAACCAATCTTGACTTTTCATATGGATTTATCACCTATTCTTCTTGATACTATGTATGTTGGTTTTTCTGCTTCAACTGGTTTACTTGCTAGTTCTCATTATGTTTTGGGTTGGAGTTTTAAAATCAATGGACCAGCACCATTTCTTGATTTGTCTAAACTTCCACAACTTCCACagccaaagaagaaaaacactTCTTTGATAATCGGTGTTTCGGTCATGGCTTCCGTTATTGCATTGTGTTCTATAGCATTTGGTTTTTACCTTTTTAGAAAGATTAAGAATGCTGATGTGATAGAGGCTTGGGAGCTTGAAGTTGGGCCTCATAGATACTCTTATCAAGAGTTAAAGAAAGCTACAAAAGGTTTCAAGGAGAAACAGTTACTTGGGCAGGGTGGTTTTGGCAAAGTTTTCAAAGGGGTGTTGCCGAGGTCGAAGATTGAAGTAGCTGTTAAGAGAGTTTCACATGAATCAAAACAAGGGCTTAGGGAATTCGTGTCTGAAATTGCTAGCATAGGACGGCTTCGCCACCGGAATTTGGTTATGTTACTCGGGTGGTGTCGGCGCAGAGGTGACCTTTTACTTGTGTATGATTTCATGGCGAATGGAAGCTTAGACAAGTACTTGTTTGAAGATACAGAGTTTGTGCTAAGTTGGGAACAAAGGTTTAAGATAATAAAGGGCGTTGCTTCGGGTCTTTTGTATCTACATGAAGGCTATGAGCAAGTGGTAATACATAGAGATGTTAAAGCTAGCAATGTGCTTTTAGATTTTGAACTCAATGGAAGATTAGGTGATTTTGGTTTGGCAAGGTTATATGAACATGGCGCAAATCCCGGAACAACAAGAGTGGTTGGAACACTAGGCTATTTGGCACCGGAGTTACCTAGAACCGGAAGAGCAACAACAAGCTCTGACGTATTTGCATTCGGCGCGCTTCTTCTCGAGGTTGTTTGCGGAAGAAGGCCTATTGAACCTAAGGCGTTACAAGAAGAGTTGGTGTTAGTAGATTGGGTTTGGGAAAGGTTTAAAGATGGAAGAATGTTTGAAGTTGTAGATCCTAAATTGAATGGCGATTTTGTTGAAAGTGAGGTAATGATGGTGTTGAAATTAGGGTTAATATGCTCAAATGATGTTCCTACTATAAGGCCTAGCATGAGACAAGTAGTAAGGATTTTGGATGGAGAAGTTGAGTTGCCAAATGAATTGAGAAAACCAGGAGGTATTGATTCACAAGAGGGATTTGATGAATTCTTGCATTCTCTTGCATCTTCTTCATTTGATAAGATGAGTTCAAGTTCTTATATTGGAAATAGAGACATCGATACTAGTTTCATCACTTTTGGTAATTCACCTCAATCAATTCTCAATGCTAGAGGAGAAACAAGGtga 2049 0.3548 MTTHLQFLLPFLFFLFVPILSQVDQVLYAGFKNISPKNLTLNGIAEIEKNGIIRLTNETSRLLGHAFYPLPFQLKNKTTGKVFSFSSSFALSVVPEYPKLGGHGMAFTIAPSKDLKALPSQYLGLLNSSDVGNFSNHLFAVEFDSVQDFEFGDINDNHVGININSMHSNASVTAGYYDDNLVVQNISIKSGKPILVWVDYDSSMNLISVTLSPTSNKPKKPILTFHMDLSPILLDTMYVGFSASTGLLASSHYVLGWSFKINGPAPFLDLSKLPQLPQPKKKNTSLIIGVSVMASVIALCSIAFGFYLFRKIKNADVIEAWELEVGPHRYSYQELKKATKGFKEKQLLGQGGFGKVFKGVLPRSKIEVAVKRVSHESKQGLREFVSEIASIGRLRHRNLVMLLGWCRRRGDLLLVYDFMANGSLDKYLFEDTEFVLSWEQRFKIIKGVASGLLYLHEGYEQVVIHRDVKASNVLLDFELNGRLGDFGLARLYEHGANPGTTRVVGTLGYLAPELPRTGRATTSSDVFAFGALLLEVVCGRRPIEPKALQEELVLVDWVWERFKDGRMFEVVDPKLNGDFVESEVMMVLKLGLICSNDVPTIRPSMRQVVRILDGEVELPNELRKPGGIDSQEGFDEFLHSLASSSFDKMSSSSYIGNRDIDTSFITFGNSPQSILNARGETR 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01180 682 CDD lectin_legume_LecRK_Arcelin_ConA 28 263 IPR001220 GO:0030246
Tsu04g01180 682 Gene3D Transferase(Phosphotransferase) domain 1 419 625 - -
Tsu04g01180 682 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 5 666 - -
Tsu04g01180 682 ProSiteProfiles Protein kinase domain profile. 342 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01180 682 Pfam Protein kinase domain 342 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01180 682 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 281 IPR013320 -
Tsu04g01180 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Tsu04g01180 682 Gene3D - 27 265 - -
Tsu04g01180 682 SMART serkin_6 342 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01180 682 Pfam Legume lectin domain 27 273 IPR001220 GO:0030246
Tsu04g01180 682 SUPERFAMILY Protein kinase-like (PK-like) 324 620 IPR011009 -
Tsu04g01180 682 Gene3D Phosphorylase Kinase; domain 1 327 418 - -
Tsu04g01180 682 PANTHER - 5 666 - -
Tsu04g01180 682 CDD STKc_IRAK 348 614 - -
Tsu04g01180 682 ProSitePatterns Protein kinases ATP-binding region signature. 348 371 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01180 Tsu-Chr4 11728151 11730585 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01180 19 682 Receptor kinase-like Gene Family AT3G55550 57.801 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu04g01180 Pkinase 2.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01180 - - gmx:100784346 1043.49