Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01179 ATGTCTTCAAAACTTGTAGCAATATTTTTCATGTTTGTGTCATTAGTAGTAGCAAGTGAAGATAGCAATATTAGTTTCATCTATAATGGATTCAAATCATCACATGAACATGATTTGTATCTTGATGGTGTTGCTGATTTAACCTCAAATGGTTTACTTAGATTAACCAATgatacaaaacaacaaaagggtCATGCTTATTATCCAAATCCTATAGTTTTCAACAATGGAAGTAGTAGTACTAGTAATggtatttcttctttttcaactaCTTTTGTTTTTGCTATAAGATCAGAGTTTCCTAATCTTAGTGGTCATGgaattgtttttgttatttctcCAACAAAAGGGTTACCAAATTCACTACCAAGTCAATACCTTGGTGTATTCAATGAATCAAACATAGGAAACAACGAAAACCGCGTTTTCGCTTTAGAACTTGATACAATTATGAATACTGAGTTTGATGATATCAATGATAACCATGTTGGAATTGATATCAATGGATTGAAATCAGAAAAATCAGCTTCTGCAGGATATCATGACATTGGTGATAATGAGTTCAAGAATTTAAGCCTTTTTAGTGGCTTACCAATGCAAGTTTGGTTGGAGTATGATAGTGAAAAGACAAAGATTGATGTTACTTTAGCTCCAATTAATGTTGTTAAACCAAAACAACCTTTGTTATCATTGAACAAAGATCTTTCTTCAATTTTGGAAAATACTATGTATGTTGGATTTTCATCTTCAACAGGTTCAATTCTAACTTCTCATTATGTTCTTGGTTGGAGTTTTAAGGTTAATGGTCAAgctcaaaaccttaaaatctcAGAACTTCCAAAGCTACCAACTTTAGGTGAAAAAAAAGATTCTAAGGTAATTTTGATTATTGGGTTGCCTTTAATTTCACTATGTTTGATTCTAATGGTAGCTATAGGAatctttcatttcatcaaaaggaagaaaaaattcTCTGAGCTTCATGAAGATTGGGAGAAAGACTATGGAACACAAAGATTCAAGTACAAAGATTTATACTTAGCAACAAAAGGTTTCAAGGAGAAAGAACTATTAGGAACAGGTGGATTTGGTAGAGTCTACAAAGGTGTGATGCCAATTTCAAAGCTTGAAGTAGCTGTGAAGAGAGTTTCACATGAATCAAGACAAGGTATGAAGGAATTCGTAGCGGAAATCGTTAGTATCGGTCGTCTTCGTCATAGAAATCTTGTTCCGCTTCTCGGCTATTGTAGGCGAAAAGGCGAGTTACTTTTGGTTTATGATTATATGGCTAATGGAAGCTTAGACAAATATTTACACAACAAAGAACAAAGATTTACCTTAAATTGGAATCAAAGATTTAGAATCATTAAAGGTGTTGCTTCTGGTTTGTTTTATTTACATGAAGAATGGGAACAAGTTGTGGTTCATAGAGATATTAAAGCTAGTAATGTTTTATTAGATTCTGAATTAAATGGTAGATTAGGTGATTTTGGTCTTTCAAGATTATATGATCATGGAACTGATCCACAAACAACACATGTTGTTGGAACACTTGGTTATTTAGCACCAGAACATACAAGAACAGGTAAAGCTACAACAAGTTCTGATGTTTATTCTTTTGGTGCTTTTTTACTTGAAGTAGTTTGTGGTAAAAGGCCTATAGAACAAATAAGAGAATGTGAGAGTGTAATTTTAGTTGATTATGTTTATGACTATTGGAAAAGAGGTGAGATTATTGAGGCTAAAGATGTAAATTTAGGTATGGATTATGTggttgaagaagttgaattGGTTTTGAAACTTGGTTTGTTATGTTCACATTGTGAGGCTTTGGCTAGACCAAGTATGAGACAAGTTTTAAGGTATTTGGAAAGGGATTTGGCACTTCCTGATTTGAGTTTTCTTAGTTTAAGTTCAATGGGATTAACTTCTGGACAGTGTGAGAATTTTCAAGATTTTGGTATGTCTTATGCTTCTTCTTCTATGGATAGACCATTCTCTCATACTTCTTCAATTGCTGAATCACTTCTCTCTGGTGGTAGATGA 2046 0.3109 MSSKLVAIFFMFVSLVVASEDSNISFIYNGFKSSHEHDLYLDGVADLTSNGLLRLTNDTKQQKGHAYYPNPIVFNNGSSSTSNGISSFSTTFVFAIRSEFPNLSGHGIVFVISPTKGLPNSLPSQYLGVFNESNIGNNENRVFALELDTIMNTEFDDINDNHVGIDINGLKSEKSASAGYHDIGDNEFKNLSLFSGLPMQVWLEYDSEKTKIDVTLAPINVVKPKQPLLSLNKDLSSILENTMYVGFSSSTGSILTSHYVLGWSFKVNGQAQNLKISELPKLPTLGEKKDSKVILIIGLPLISLCLILMVAIGIFHFIKRKKKFSELHEDWEKDYGTQRFKYKDLYLATKGFKEKELLGTGGFGRVYKGVMPISKLEVAVKRVSHESRQGMKEFVAEIVSIGRLRHRNLVPLLGYCRRKGELLLVYDYMANGSLDKYLHNKEQRFTLNWNQRFRIIKGVASGLFYLHEEWEQVVVHRDIKASNVLLDSELNGRLGDFGLSRLYDHGTDPQTTHVVGTLGYLAPEHTRTGKATTSSDVYSFGAFLLEVVCGKRPIEQIRECESVILVDYVYDYWKRGEIIEAKDVNLGMDYVVEEVELVLKLGLLCSHCEALARPSMRQVLRYLERDLALPDLSFLSLSSMGLTSGQCENFQDFGMSYASSSMDRPFSHTSSIAESLLSGGR 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01179 681 Pfam Protein kinase domain 352 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01179 681 Gene3D - 22 282 - -
Tsu04g01179 681 Pfam Legume lectin domain 24 280 IPR001220 GO:0030246
Tsu04g01179 681 CDD STKc_IRAK 358 625 - -
Tsu04g01179 681 CDD lectin_legume_LecRK_Arcelin_ConA 24 269 IPR001220 GO:0030246
Tsu04g01179 681 SMART serkin_6 352 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01179 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Tsu04g01179 681 ProSitePatterns Protein kinases ATP-binding region signature. 358 381 IPR017441 GO:0005524
Tsu04g01179 681 PANTHER - 6 676 - -
Tsu04g01179 681 ProSiteProfiles Protein kinase domain profile. 352 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01179 681 Gene3D Transferase(Phosphotransferase) domain 1 429 629 - -
Tsu04g01179 681 Gene3D Phosphorylase Kinase; domain 1 337 428 - -
Tsu04g01179 681 SUPERFAMILY Protein kinase-like (PK-like) 334 634 IPR011009 -
Tsu04g01179 681 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IV.1-LIKE 6 676 - -
Tsu04g01179 681 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 287 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01179 Tsu-Chr4 11708290 11710408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01179 19 681 Receptor kinase-like Gene Family AT2G37710 62.406 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu04g01179 Pkinase 6.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01179 - - gmx:100802293 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01179 04 11708290 11710408 Tsu04g01179 04 11708290 11710408 ECH