Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01176 ATGTTCCTCAATCTTGTGTTGGTGTTTTTTCTTGTTACATTGGTAGCAAGTAAAGATAACAGTTTCATCTATAATAATGGATTCCAATCATCTCATTTGTATCTTGATGGTATTGCAAATTTAACCTCCAATGGCATAATAAGACTCACCAATGacacaaaacaagaaaaagcaCATGCTTTTTATCCAAATCCTATAGTTTTCAAAAACACTTCCAATGGAAGTGTCTCTTCTTTCTCAACTAGTTTTGTTTTTGCTATAAGACCTCAATATGCAACTCTTAGTGGCCATGgaattgtttttgttgtttctccTACAAAAGGGCTACCATATTCAATACCAAGTCAATACCTTGGTCTCTTTAACAAATCCAACAATGGAAACACTAGCAACCATGTTTTTGGTGTTGAACTTGATACTATTGTAAATAATGAGTTTAGTGATATCAATGATAACCATGTTGGTATTGATATCAATGATTTGAATTCAACTATTTCAACTCCTGCAGGATattatgatgataataatggTCAACTCAAGAATTTGACTCTTTTCAGTGGCTATCCTATGCAGGTATGGATTGAATATGATAGTGAAAAGACAAAGATTGATGTTACTTTAGCTCCAATTAATGTtgttaaaccaaaaaaatctttgttatcATTGACCAAAGATCTTTCTCCAATTTTGAACAATAGTATGTATGTTGGATTTTCATCAGCTACTGGTTCAGTTTTCACTTCTCATTATATTCTTGGTTGGAGTTTTAAGGTTAATGGTAAAGCTCAAGACCTTATAATATCTCAACTTCCAAAGTTACCAAGATTTGGTGAGAAAAAAGAGTCAAAATTTTTAACTGTTGGGTTGCCTTTGATTTTGCTAAGTTTGGTTTTCATGATAACTTTAGgggttatttattttatcaaaaggAAGAATAAGTTTGCTGAGATTCTTGAAGATTGGGAACATGAATATGGTCCACATAGATTTAAGTTCAAAGATCTATACTTTGCTACAAAGGGTTTCAAGGAAAAAGGGCTATTGGGAGTTGGTGGATTCGGTAGAGTCTACAAAGGTGTGATGCCAGGTTCAAAACTTGAGGTAGCTGTGAAAAGAGTTTCTCATGAATCGAGACAAGGGATGAGGGAATTCGTGTCGGAGATTGTTAGTATCGGTCGCCTTCGTCACAGGAATCTTGTTCCACTTCTCGGCTATTGCAGGCGAAAAGGCGAGTTACTTTTGGTTTATGATTACATGTCTAATGGAAGTTTAGACCATTATCTATATAACCAACCAGAAGTAAGCTTGAATTGGTATCAAAGATTTAAAGTCATCAAAGGTGTTGCTTCTGGTTTGTTTTATCTACATGAAGGGTGGGAACAAGTTGTGATTCATAGAGACATAAAGGCTAGTAATGTTTTATTAGATGCTGAGTTGAATGGTAGATTAGGAGATTTTGGTCTTGCAAGGTTATATGATCATGGTGCTGATCCTCACACAACTCATTTGGTTGGTACTGTAGGGTATCTAGCTCCGGAGCATACAAGAACAGGTAAAGCAACTAAATTTTCTGATGTGTTTGCTTTCGGTGCTTTTCTTCTCGAGGTTGTTTGTGGTAAGAGACCTATAGATCATGTTAGTGAAAATGAGACTGTAATTCTAGTTGATTATGTGTTTGAACGTTGGAAAAATGGCGAGATTCTTGAGGCAATGGATCAAAACTTAGGATCAGATTATGTGTCTGAAGAAGTTGAATTGGTGTTGAAACTTGGTTTGTTGTGTTCACATTCAGAACCTATGGCTAGGCCAAGTATGAGACAAGTTGTGCAGTTTTTGGAGAGGGATATACCTTTACCAGATTTGTCTTTGCTTAGTTTATCTTCTTCTGGTTTAACTTTTGGGTACCAACAAGAATATTTTGAGGATTTTCCAATGTCATATCCATCATCTTCTATGGACAAGACAATGTCACATACTTCGGTATCTATTGCTGATTCACTTCTCTCCGGTGGTCGTTGA 2019 0.3413 MFLNLVLVFFLVTLVASKDNSFIYNNGFQSSHLYLDGIANLTSNGIIRLTNDTKQEKAHAFYPNPIVFKNTSNGSVSSFSTSFVFAIRPQYATLSGHGIVFVVSPTKGLPYSIPSQYLGLFNKSNNGNTSNHVFGVELDTIVNNEFSDINDNHVGIDINDLNSTISTPAGYYDDNNGQLKNLTLFSGYPMQVWIEYDSEKTKIDVTLAPINVVKPKKSLLSLTKDLSPILNNSMYVGFSSATGSVFTSHYILGWSFKVNGKAQDLIISQLPKLPRFGEKKESKFLTVGLPLILLSLVFMITLGVIYFIKRKNKFAEILEDWEHEYGPHRFKFKDLYFATKGFKEKGLLGVGGFGRVYKGVMPGSKLEVAVKRVSHESRQGMREFVSEIVSIGRLRHRNLVPLLGYCRRKGELLLVYDYMSNGSLDHYLYNQPEVSLNWYQRFKVIKGVASGLFYLHEGWEQVVIHRDIKASNVLLDAELNGRLGDFGLARLYDHGADPHTTHLVGTVGYLAPEHTRTGKATKFSDVFAFGAFLLEVVCGKRPIDHVSENETVILVDYVFERWKNGEILEAMDQNLGSDYVSEEVELVLKLGLLCSHSEPMARPSMRQVVQFLERDIPLPDLSLLSLSSSGLTFGYQQEYFEDFPMSYPSSSMDKTMSHTSVSIADSLLSGGR 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01176 672 Gene3D Transferase(Phosphotransferase) domain 1 419 623 - -
Tsu04g01176 672 SMART serkin_6 342 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01176 672 Gene3D - 19 270 - -
Tsu04g01176 672 CDD lectin_legume_LecRK_Arcelin_ConA 21 260 IPR001220 GO:0030246
Tsu04g01176 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Tsu04g01176 672 ProSiteProfiles Protein kinase domain profile. 342 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01176 672 PANTHER - 6 662 - -
Tsu04g01176 672 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 278 IPR013320 -
Tsu04g01176 672 Pfam Legume lectin domain 20 270 IPR001220 GO:0030246
Tsu04g01176 672 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IV.1-LIKE 6 662 - -
Tsu04g01176 672 SUPERFAMILY Protein kinase-like (PK-like) 317 613 IPR011009 -
Tsu04g01176 672 Gene3D Phosphorylase Kinase; domain 1 327 418 - -
Tsu04g01176 672 CDD STKc_IRAK 348 614 - -
Tsu04g01176 672 Pfam Protein kinase domain 342 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01176 672 ProSitePatterns Protein kinases ATP-binding region signature. 348 371 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01176 Tsu-Chr4 11657981 11660192 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01176 16 672 Receptor kinase-like Gene Family AT2G37710 66.616 0.0 869
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu04g01176 Pkinase 9.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01176 - - adu:107484540 984.171