Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01175 ATGTTCCTCAAGCTcgtgtttgtgttgttttttcttgttaCGTTGGTAGCAAGTAAAGATAACAGTTTCATCTATAATGGATTCCAATCGTCAAACTTATATCTTGATGGTACTGCTAACTTAACCTCAAATGGCTTACTAAGACTAACCAATGATGAAACGCAAGTAATAGGCCATGCTTTCTATCAAAATCCTATACTTTTCAAAAAAACTTGTGATGGAAGTGTGTCTTCTTTCTCAACTACTTTTGTATTTGCCATAACATCAGAGTTTCCTAATTTTATTAATGGTCAGGgaattgtttttgttgtttctccCACAAAAGAGCTACCATCTTCACTACCAACTCAGTACCTTGGTCTATTCAATGAGTCAAACTATGAAAACAGTAACAACCATGTTTTTGGTGTTGAACTTGATACTATGCAAAATGAAGAGTTTAATGATAACGGTGATAACCATGTTGGTATTAATATCAATAATGTGAAATCATATCGTTCAGCACCTGCTGGATATTATGATAATTATAATGATCATTTTAATTCTATTTCCCTTTCCAGTGGAGATCCGATCCAGGTATGGATTGAATATGATGAAGTCAAGAAAAAGTTTGATGTTACTTTAGCTCCAATTAATGTTGTTAAACCAACACGACCTTTGTTATCAATGACCAAAGATCTTTCACCAATTCTTAACAATAACATGTATGTTGGATTTTCATCAGCTACCGGTTATATTCCTACTTATCATGATGTTCTTGGTTGGAGTTTTAAGATTGATGGTCAAGTTCAAAACCTTATAATCTCTAAACTTCCATCACTAACAAGATTTTCAGAGAAAAAAGAGTCAAATATTTTAACTGTTGGCTTGCCTTTGATTTTGCTAAGTTTGGTTTTCATGATAACTTTAGGGGTTATGTATTATATCAAAAGGAAGAAGTTTGCTGAGATTCTTGAAGATTGGGAACATGAATATGGTCCACATAGATTTAAGTTCAAAGATCTATACTCTGCCACCAATGGCTTCAAGGAAAAAGGGCTATTGGGAGTTGGTGGATTTGGTAGAGTCTACAAAGGTGTGATACCAAGTTCCAAACTTGAGGTTGCTGTGAAAAGGGTGTCTCATGAATCAAGACAAGGGATGAGGGAATTTGTAGCGGAGATTGTTAGTATCGGTCGTCTTTGTCACAGGAATCTTGTTCCACTTCTCGGCTATTGCAGACGAAAAGACGAGTTACTTTTGGTTTATGAGTACATGCCTAATGGAAGTTTAGACAATTATCTATACAAACAACCAAAAGTGAGCTTGAATTGGTGTCAAAGATTTAAAATCATCAAAGGGGTTGCTTCGGGTTTGTTTTATCTACATGAAGAATGGGAGCAAGTTGTGATTCATAGAGACATAAAAGCTAGCAATGTGATGTTAGATGCTGAACTTAATGCTAGATTGGGAGATTTTGGACTTTCGAGATTGCATGATCATGGTGCTGATCCGCATACAACTCATGTAGCTGGAACTGTAGGTTATCTTGCTCCTGAGCATACCAGAACAGGTAAAGCGACTAAATTTTCTGATGTGTATGCTTTTGGTGCATTTCTTCTTGAGGTTGTTTGTGGTAGGAGGCCTATAGATCATGTAGGAAAATATGAGAGTGTTATTCTAGTTGATTGTGTGTTTCAATGTTGGGAAAGAGGTGAGATTCTTGAGGCAAAGGACGCAAACTTAGGATCGGATTATGTGTCTGATGAGGTTGAATTGGTATTGAAACTTGGCTTGTTGTGTTCACATTCAGAACCTTTGGCTAGACCAAGTATGAGGCAAGTTATGCAGTATTTGGAGAGGGATATACCTTTGCCTGATTTGTCTTTGCTTAGTTTATCTTCTTTTGGATTAACTTTTGGGTACCAAGAAGTTGTCAAGGACAAAACAATTTCACATGTTTCTGTGTCTGTTCCTGAATCTCTTCTCTCTGGTGGTCGATGA 1983 0.357 MFLKLVFVLFFLVTLVASKDNSFIYNGFQSSNLYLDGTANLTSNGLLRLTNDETQVIGHAFYQNPILFKKTCDGSVSSFSTTFVFAITSEFPNFINGQGIVFVVSPTKELPSSLPTQYLGLFNESNYENSNNHVFGVELDTMQNEEFNDNGDNHVGININNVKSYRSAPAGYYDNYNDHFNSISLSSGDPIQVWIEYDEVKKKFDVTLAPINVVKPTRPLLSMTKDLSPILNNNMYVGFSSATGYIPTYHDVLGWSFKIDGQVQNLIISKLPSLTRFSEKKESNILTVGLPLILLSLVFMITLGVMYYIKRKKFAEILEDWEHEYGPHRFKFKDLYSATNGFKEKGLLGVGGFGRVYKGVIPSSKLEVAVKRVSHESRQGMREFVAEIVSIGRLCHRNLVPLLGYCRRKDELLLVYEYMPNGSLDNYLYKQPKVSLNWCQRFKIIKGVASGLFYLHEEWEQVVIHRDIKASNVMLDAELNARLGDFGLSRLHDHGADPHTTHVAGTVGYLAPEHTRTGKATKFSDVYAFGAFLLEVVCGRRPIDHVGKYESVILVDCVFQCWERGEILEAKDANLGSDYVSDEVELVLKLGLLCSHSEPLARPSMRQVMQYLERDIPLPDLSLLSLSSFGLTFGYQEVVKDKTISHVSVSVPESLLSGGR 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01175 660 Gene3D Transferase(Phosphotransferase) domain 1 419 623 - -
Tsu04g01175 660 PANTHER - 4 636 - -
Tsu04g01175 660 Pfam Legume lectin domain 21 271 IPR001220 GO:0030246
Tsu04g01175 660 SMART serkin_6 342 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01175 660 ProSiteProfiles Protein kinase domain profile. 342 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01175 660 CDD lectin_legume_LecRK_Arcelin_ConA 22 261 IPR001220 GO:0030246
Tsu04g01175 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Tsu04g01175 660 Gene3D - 19 272 - -
Tsu04g01175 660 Gene3D Phosphorylase Kinase; domain 1 327 418 - -
Tsu04g01175 660 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 262 IPR013320 -
Tsu04g01175 660 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IV.1-LIKE 4 636 - -
Tsu04g01175 660 CDD STKc_IRAK 348 614 - -
Tsu04g01175 660 Pfam Protein kinase domain 342 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01175 660 SUPERFAMILY Protein kinase-like (PK-like) 323 622 IPR011009 -
Tsu04g01175 660 ProSitePatterns Protein kinases ATP-binding region signature. 348 371 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01175 Tsu-Chr4 11654252 11656234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01175 17 660 Receptor kinase-like Gene Family AT2G37710 59.817 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu04g01175 Pkinase 2.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01175 - - gmx:100783815 897.501